Medical & Molecular Genetics

Publications

Chapter

Neural regeneration

Steward, M. M., Sridhar, A. & Meyer, J. S., Apr 29 2013, New Perspectives in Regeneration. p. 163-191 29 p. (Current Topics in Microbiology and Immunology; vol. 367).

Research output: Chapter in Book/Report/Conference proceedingChapter

17 Scopus citations

Organotypic Models of Metastasis: A Three-dimensional Culture Mimicking the Human Peritoneum and Omentum for the Study of the Early Steps of Ovarian Cancer Metastasis

Kenny, H. A., Dogan, S., Zillhardt, M., K. Mitra, A., Yamada, S. D., Krausz, T. & Lengyel, E., 2009, Ovarian Cancer: Second Edition. Stack, S. & Fishman, D. (eds.). p. 335-351 17 p. (Cancer Treatment and Research; vol. 149).

Research output: Chapter in Book/Report/Conference proceedingChapter

56 Scopus citations

Preparation and use of a yeast shRNA delivery system for gene silencing in mosquito larvae

Mysore, K., Hapairai, L. K., Wei, N., Realey, J. S., Scheel, N. D., Severson, D. W. & Duman-Scheel, M., 2019, Methods in Molecular Biology. Humana Press Inc., p. 213-231 19 p. (Methods in Molecular Biology; vol. 1858).

Research output: Chapter in Book/Report/Conference proceedingChapter

7 Scopus citations

Presymptomatic genetic testing in children

Quaid, K. A., Jan 1 2009, Pediatric Bioethics. Cambridge University Press, p. 125-140 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Production of retroviral vectors for clinical use

Cornetta, K., Reeves, L. & Cross, S., 2008, Gene Therapy Protocols: Production and In Vivo Applications of Gene Transfer Vectors. Humana Press, p. 17-32 16 p. (Methods in Molecular Biology; vol. 433).

Research output: Chapter in Book/Report/Conference proceedingChapter

7 Scopus citations

Replication-Competent Lentivirus Analysis of Vector-Transduced T Cell Products Used in Cancer Immunotherapy Clinical Trials

Cornetta, K., Koop, S., Nance, E., House, K. & Duffy, L., Jan 1 2020, Methods in Molecular Biology. Humana Press Inc., p. 181-194 14 p. (Methods in Molecular Biology; vol. 2086).

Research output: Chapter in Book/Report/Conference proceedingChapter

Safety of Retroviral Vectors: Regulatory and Technical Considerations

Cornetta, K. & Wilson, C. A., Apr 11 2007, Concepts in Genetic Medicine. John Wiley and Sons, p. 277-288 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Scopus citations

ShRNA-induced interferon-stimulated gene analysis

Morral, N. & Witting, S. R., 2012, Cytokine Protocols. Ley, M. (ed.). p. 163-177 15 p. (Methods in Molecular Biology; vol. 820).

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Scopus citations

Skeletal Genetics: From Gene Identification to Murine Models of Disease

White, K. E., Koller, D. L. & Corbin, T., Aug 12 2013, Basic and Applied Bone Biology. Elsevier Inc., p. 149-171 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Scopus citations

The social symbiome framework: Linking genes-to-global cultures in public health using network science

Pescosolido, B. A., Olafsdottir, S., Sporns, O., Perry, B. L., Meslin, E. M., Grubesic, T. H., Martin, J. K., Koehly, L. M., Pridemore, W., Vespignani, A., Foroud, T. & Shekhar, A., Nov 25 2016, Handbook of Applied System Science. Taylor and Francis Inc., p. 25-48 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Scopus citations
Comment/debate

A novel mutation in exon 3 of the proteolipid protein gene in pelizaeus-merzbacher disease

Pratt, V. M., Naidu, S., Dlouhy, S. R., Marks, H. G. & Hodes, M. E., Feb 1995, In : Neurology. 45, 2, p. 394-395 2 p.

Research output: Contribution to journalComment/debate

12 Scopus citations

A reintroduction to Mendelian genetics

Dlouhy, S. R., Jan 1 1997, In : Cancer Investigation. 15, 5, p. 429-434 6 p.

Research output: Contribution to journalComment/debate

1 Scopus citations

Author Correction: Genetic meta-analysis of diagnosed Alzheimer’s disease identifies new risk loci and implicates Aβ, tau, immunity and lipid processing (Nature Genetics, (2019), 51, 3, (414-430), 10.1038/s41588-019-0358-2)

Alzheimer Disease Genetics Consortium (ADGC), The European Alzheimer’s Disease Initiative (EADI), Cohorts for Heart and Aging Research in Genomic Epidemiology Consortium (CHARGE) & Genetic and Environmental Risk in AD/Defining Genetic, Polygenic and Environmental Risk for Alzheimer’s Disease Consortium (GERAD/PERADES), Sep 1 2019, In : Nature genetics. 51, 9, p. 1423-1424 2 p.

Research output: Contribution to journalComment/debate

Open Access
3 Scopus citations

Author Correction: Mutant p53 drives clonal hematopoiesis through modulating epigenetic pathway (Nature Communications, (2019), 10, 1, (5649), 10.1038/s41467-019-13542-2)

Chen, S., Wang, Q., Yu, H., Capitano, M. L., Vemula, S., Nabinger, S. C., Gao, R., Yao, C., Kobayashi, M., Geng, Z., Fahey, A., Henley, D., Liu, S. Z., Barajas, S., Cai, W., Wolf, E. R., Ramdas, B., Cai, Z., Gao, H., Luo, N. & 12 others, Sun, Y., Wong, T. N., Link, D. C., Liu, Y., Boswell, H. S., Mayo, L. D., Huang, G., Kapur, R., Yoder, M. C., Broxmeyer, H. E., Gao, Z. & Liu, Y., Dec 1 2020, In : Nature communications. 11, 1, 3856.

Research output: Contribution to journalComment/debate

Open Access

Author Correction: Multimodal hippocampal subfield grading for Alzheimer’s disease classification (Scientific Reports, (2019), 9, 1, (13845), 10.1038/s41598-019-49970-9)

Alzheimer’s Disease Neuroimaging Initiative, Dec 1 2020, In : Scientific reports. 10, 1, 10969.

Research output: Contribution to journalComment/debate

Open Access

Correction: Genetic risk for schizophrenia and psychosis in Alzheimer disease (Molecular Psychiatry, (2018), 23, 4, (963-972), 10.1038/mp.2017.81)

DeMichele-Sweet, M. A. A., Weamer, E. A., Klei, L., Vrana, D. T., Hollingshead, D. J., Seltman, H. J., Sims, R., Foroud, T., Hernandez, I., Moreno-Grau, S., Tárraga, L., Boada, M., Ruiz, A., Williams, J., Mayeux, R., Lopez, O. L., Sibille, E. L., Kamboh, M. I., Devlin, B. & Sweet, R. A., Jan 1 2019, In : Molecular Psychiatry.

Research output: Contribution to journalComment/debate

Open Access

Corrections: Neuron-specific HuR-deficient mice spontaneously develop motor neuron disease (Journal of Immunology (2018) 201 (157-166) DOI: 10.4049/jimmunol.1701501)

Sun, K., Li, X., Chen, X., Bai, Y., Zhou, G., Kokiko-Cochran, O. N., Lamb, B., Hamilton, T. A., Lin, C. Y., Lee, Y. S. & Herjan, T., Sep 1 2018, In : Journal of Immunology. 201, 5, 1 p.

Research output: Contribution to journalComment/debate

Corrections (Arch Pathol Lab Med. (2010) 134:2 (163))

Vance, G. H., Apr 1 2010, In : Archives of Pathology and Laboratory Medicine. 134, 4, 1 p.

Research output: Contribution to journalComment/debate

Correction to: A nonsynonymous mutation in PLCG2 reduces the risk of Alzheimer’s disease, dementia with Lewy bodies and frontotemporal dementia, and increases the likelihood of longevity (Acta Neuropathologica, (2019), 138, 2, (237-250), 10.1007/s00401-019-02026-8)

EADB (Alzheimer Disease European DNA biobank), IFGC (International FTD-Genomics Consortium), IPDGC (The International Parkinson Disease Genomics Consortium), RiMod-FTD (Risk and Modifying factors in Fronto-Temporal Dementia), Netherlands Brain Bank (NBB), The GIFT (Genetic Investigation in Frontotemporal Dementia and Alzheimer’s Disease) Study Group & DESGESCO (Dementia Genetics Spanish Consortium), May 1 2020, In : Acta Neuropathologica. 139, 5, p. 959-962 4 p.

Research output: Contribution to journalComment/debate

Open Access

DVL regulation of tissue-specific aromatase transcripts in breast cancer

O'Hagan, H. M., Dec 1 2018, In : Oncotarget. 9, 101, p. 37458-37459 2 p.

Research output: Contribution to journalComment/debate

Open Access

Erratum: Pyruvate carboxylase deficiency - Insights from liver transplantation (Molecular Genetics and Metabolism (2002) 77 (143-149) PII: S1096-7192(02)00123-3)

Nyhan, W. L., Khanna, A., Barshop, B. A., Naviaux, R. K., Precht, A. F., Levine, J. E., Hart, M. A., Hainline, B. E., Wappner, R. S., Nichols, S. & Haas, R. D., Mar 1 2006, In : Molecular Genetics and Metabolism. 87, 3 SPEC. ISS., 1 p.

Research output: Contribution to journalComment/debate

Erratum: Perceived genetic risks for bipolar disorder in a patient population: An exploratory study (Journal of Genetic Counseling (2001) 10 (41-52))

Quaid, K. A., Aschen, S. R., Smiley, C. L. & Nurnberger, J. I., 2002, In : Journal of Genetic Counseling. 11, 1, p. 79 1 p.

Research output: Contribution to journalComment/debate

Erratum: Loss of homeostatic microglial phenotype in CSF1R-related Leukoencephalopathy (Acta Neuropathol Commun (2020) 8: 72 DOI: 10.1186/s40478-020-00947-0)

Kempthorne, L., Yoon, H., Madore, C., Smith, S., Wszolek, Z. K., Rademakers, R., Kim, J., Butovsky, O. & Dickson, D. W., Jun 24 2020, In : Acta Neuropathologica Communications. 8, 1, 90.

Research output: Contribution to journalComment/debate

Open Access

Erratum: Quantitative high throughput screening using a primary human three-dimensional organotypic culture predicts in vivo efficacy (Nature Communications (2015) 6:6220 doi: 10.1038/ncomms7220)

Kenny, H. A., Lal-Nag, M., White, E. A., Shen, M., Chiang, C. Y., Mitra, A. K., Zhang, Y., Curtis, M., Schryver, E. M., Bettis, S., Jadhav, A., Boxer, M. B., Li, Z., Ferrer, M. & Lengyel, E., Feb 3 2016, In : Nature communications. 7, 10649.

Research output: Contribution to journalComment/debate

Erratum: Composite functional genetic and comedication CYP2D6 activity score in predicting tamoxifen drug exposure among breast cancer patients (Journal of Clinical Pharmacology (2010) 50: 4 (450-458) DOI: 10.1177/0091270009359182)

Borges, S., Desta, Z., Jin, Y., Faouzi, A., Robarge, J. D., Philip, S., Nguyen, A., Stearns, V., Hayes, D., Rae, J. M., Skaar, T. C., Flockhart, D. A. & Li, L., Jun 2010, In : Journal of clinical pharmacology. 50, 6, p. 725 1 p.

Research output: Contribution to journalComment/debate

Erratum to: Genome-wide association study identifies loci associated with liability to alcohol and drug dependence that is associated with variability in reward-related ventral striatum activity in African- and European-Americans (Genes, Brain and Behavior, (e12580), 10.1111/gbb.12580)

Wetherill, L., Lai, D., Johnson, E. C., Anokhin, A., Bauer, L., Bucholz, K. K., Dick, D. M., Hariri, A. R., Hesselbrock, V., Kamarajan, C., Kramer, J., Kuperman, S., Meyers, J. L., Nurnberger, J. I., Schuckit, M., Scott, D. M., Taylor, R. E., Tischfield, J., Porjesz, B., Goate, A. M. & 4 others, Edenberg, H. J., Foroud, T., Bogdan, R. & Agrawal, A., Nov 1 2019, In : Genes, Brain and Behavior. 18, 8, e12608.

Research output: Contribution to journalComment/debate

Open Access

Erratum to: Extracting drug-enzyme relation from literature as evidence for drug drug interaction

Zhang, Y., Wu, H. Y., Du, J., Xu, J., Wang, J., Tao, C., Li, L. & Xu, H., 2016, In : Journal of Animal Science and Biotechnology. 7, 1, 2.

Research output: Contribution to journalComment/debate

FDA's draft guidance on laboratory-developed tests increases clinical and economic risk to adoption of pharmacogenetic testing

Levy, K. D., Pratt, V. M., Skaar, T. C., Vance, G. H. & Flockhart, D. A., Jul 1 2015, In : Journal of clinical pharmacology. 55, 7, p. 725-727 3 p.

Research output: Contribution to journalComment/debate

4 Scopus citations

Guidelines for the molecular genetics predictive test in Huntington's disease

Went., L., Broholm, J., Cassiman, J. J., Craufurd, D., Falek, A., Farmer-Little, C., Hayden, M., Kapp, R., Krahnen, K., Martinez-Descals, A., Mol, M., Myrianthopoulos, N., Petit, H., Quaid, K., De Somviele, C., Taylor, E., Tyler, A., Walker, R. & Wexler, N., Jan 1 1994, In : Journal of Medical Genetics. 31, 7, p. 555-559 5 p.

Research output: Contribution to journalComment/debate

60 Scopus citations

Identification of functional variants from whole-exome sequencing, combined with neuroimaging genetics

Nho, K., Corneveaux, J. J., Kim, S., Lin, H., Risacher, S. L., Shen, L., Swaminathan, S., Ramanan, V. K., Liu, Y., Foroud, T., Inlow, M. H., Siniard, A. L., Reiman, R. A., Aisen, P. S., Petersen, R. C., Green, R. C., Jack, C. R., Weiner, M. W., Baldwin, C. T., Lunetta, K. & 14 others, Farrer, L. A., Furney, S. J., Lovestone, S., Simmons, A., Mecocci, P., Vellas, B., Tsolaki, M., Kloszewska, I., Soininen, H., McDonald, B. C., Farlow, M. R., Ghetti, B., Huentelman, M. J. & Saykin, A. J., Jul 2013, In : Molecular Psychiatry. 18, 7, p. 739 1 p.

Research output: Contribution to journalComment/debate

7 Scopus citations

Peripheral macrophages not ADept at amyloid clearance

Jay, T., Lamb, B. & Landreth, G., Oct 19 2015, In : Journal of Experimental Medicine. 212, 11, p. 1758 1 p.

Research output: Contribution to journalComment/debate

4 Scopus citations

Predictive accuracy of serial transvaginal cervical lengths and quantitative vaginal fetal fibronectin levels for spontaneous preterm birth among nulliparous women

Sean Esplin, M., Elovitz, M. A., Iams, J. D., Parker, C. B., Wapner, R. J., Grobman, W. A., Simhan, H. N., Wing, D. A., Haas, D. M., Silver, R. M., Hoffman, M. K., Peaceman, A. M., Caritis, S. N., Parry, S., Wadhwa, P., Foroud, T., Mercer, B. M., Hunter, S. M., Saade, G. R. & Reddy, U. M., Jan 1 2017, In : Obstetrical and Gynecological Survey. 72, 7, p. 397-399 3 p.

Research output: Contribution to journalComment/debate

Presymptomatic testing for Huntington disease: reply to Sharpe.

Quaid, K. A., Feb 1 1994, In : American Journal of Medical Genetics - Seminars in Medical Genetics. 49, 3, p. 354-356 3 p.

Research output: Contribution to journalComment/debate

6 Scopus citations

Replication-competent retroviruses in gene-modified T cells used in clinical trials: Is it time to revise the testing requirements?

Bear, A. S., Morgan, R. A., Cornetta, K., June, C. H., Binder-Scholl, G., Dudley, M. E., Feldman, S. A., Rosenberg, S. A., Shurtleff, S. A., Rooney, C. M., Heslop, H. E. & Dotti, G., Feb 2012, In : Molecular Therapy. 20, 2, p. 246-249 4 p.

Research output: Contribution to journalComment/debate

36 Scopus citations

Retraction: Withdrawal: p53 protein regulates Hsp90 ATPase activity and thereby Wnt signaling by modulating Aha1 expression (The Journal of biological chemistry (2014) 289 10 (6513-6525))

Okayama, S., Kopelovich, L., Balmus, G., Weiss, R. S., Herbert, B. S., Dannenberg, A. J. & Subbaramaiah, K., Jan 3 2020, In : The Journal of biological chemistry. 295, 1, 1 p.

Research output: Contribution to journalComment/debate

Open Access

Retraction: Withdrawal: Hsp90 and PKM2 drive the expression of aromatase in Li-Fraumeni syndrome breast adipose stromal cells (The Journal of biological chemistry (2016) 291 31 (16011-16023))

Subbaramaiah, K., Brown, K. A., Zahid, H., Balmus, G., Weiss, R. S., Herbert, B. S. & Dannenberg, A. J., Jan 3 2020, In : The Journal of biological chemistry. 295, 1, 1 p.

Research output: Contribution to journalComment/debate

Open Access

Telomerase and breast cancer

Herbert, B. S., Wright, W. E. & Shay, J. W., 2001, In : Breast Cancer Research. 3, 3, p. 146-149 4 p.

Research output: Contribution to journalComment/debate

58 Scopus citations

The national gene vector biorepository's pharm/tox database

Cornetta, K. & Matheson, L., 2009, In : Molecular Therapy. 17, 4, p. 582-584 3 p.

Research output: Contribution to journalComment/debate

1 Scopus citations
4 Scopus citations
Conference article

Evaluation of linear classifiers on articles containing pharmacokinetic evidence of drug-drug interactions

Kolchinsky, A., Lourenço, A., Li, L. & Rocha, L. M., Jan 1 2013, In : Pacific Symposium on Biocomputing. p. 409-420 12 p.

Research output: Contribution to journalConference article

12 Scopus citations

Monitoring potential drug interactions and reactions via network analysis of instagram user timelines

Correia, R. B., Li, L. & Rocha, L. M., 2016, In : Pacific Symposium on Biocomputing. p. 492-503 12 p.

Research output: Contribution to journalConference article

18 Scopus citations
Conference contribution

A framework for 3D analysis of facial morphology in fetal alcohol syndrome

Wan, J., Shen, L., Fang, S., McLaughlin, J., Autti-Rämö, I., Fagerlund, Å., Riley, E., Hoyme, H. E., Moore, E. S. & Foroud, T., Nov 9 2010, Medical Imaging and Augmented Reality - 5th International Workshop, MIAR 2010, Proceedings. p. 118-127 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6326 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

A multinational deployment of 3D laser scanning to study craniofacial dysmorphology in fetal alcohol spectrum disorders

Rogers, J., Wernert, E., Moore, E., Ward, R., Wetherill, L. F. & Foroud, T., Jan 1 2007, Proceedings of SPIE-IS and T Electronic Imaging - Videometrics IX. SPIE, 64910I. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 6491).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Analyzing patterns of literature-based phenotyping definitions for text mining applications

Binkheder, S., Wu, H. Y., Quinney, S. & Li, L., Jul 24 2018, Proceedings - 2018 IEEE International Conference on Healthcare Informatics, ICHI 2018. Institute of Electrical and Electronics Engineers Inc., p. 374-376 3 p. 8419394. (Proceedings - 2018 IEEE International Conference on Healthcare Informatics, ICHI 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

An ERα/modulator regulatory network in the breast cancer cells

Wu, H. Y., Wang, Y., Zheng, P., Jiang, G., Liu, Y., Huang, T. H. M., Nephew, K. P. & Li, L., Dec 1 2011, Proceedings 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS'11. p. 5-8 4 p. 6169427. (Proceedings - IEEE International Workshop on Genomic Signal Processing and Statistics).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Automatic segmentation and analysis of fibrin networks in 3D confocal microscopy images

Liu, X., Mu, J., Machlus, K. R., Wolberg, A. S., Rosen, E. D., Xu, Z., Alber, M. S. & Chen, D. Z., May 14 2012, Medical Imaging 2012: Image Processing. 831439. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8314).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Characterizing the roles of long non-coding RNA in rat alcohol preference

Zhou, A., Wang, Y., Liu, Y., Feng, W. & Edenberg, H., Jan 17 2017, Proceedings - 2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016. Institute of Electrical and Electronics Engineers Inc., p. 167-173 7 p. 7822513

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Combined experimental and simulation study of blood clot formation

Xu, Z., Lioi, J., Alber, M., Mu, J., Liu, X., Chen, D. Z., Kamocka, M. M. & Rosen, E. D., Dec 1 2009, TIC-STH'09: 2009 IEEE Toronto International Conference - Science and Technology for Humanity. p. 357-362 6 p. 5444476. (TIC-STH'09: 2009 IEEE Toronto International Conference - Science and Technology for Humanity).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

8 Scopus citations

Discover true association rates in multi-protein complex proteomics data sets

Shen, C., Li, L. & Chen, J. Y., Dec 1 2005, Proceedings - 2005 IEEE Computational SystemsBioinformatics Conference, CSB 2005. p. 167-174 8 p. 1498018. (Proceedings - 2005 IEEE Computational Systems Bioinformatics Conference, CSB 2005; vol. 2005).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Empirical Bayes model comparisons for differential methylation analysis

Teng, M., Wang, Y., Liu, Y., Kim, S., Balch, C., Nephew, K. P. & Li, L., 2011, Proceedings 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS'11. IEEE Computer Society, p. 9-12 4 p. 6169428. (Proceedings - IEEE International Workshop on Genomic Signal Processing and Statistics).

Research output: Chapter in Book/Report/Conference proceedingConference contribution