Medical & Molecular Genetics

Publications

Filter
Conference contribution
2017

Characterizing the roles of long non-coding RNA in rat alcohol preference

Zhou, A., Wang, Y., Liu, Y., Feng, W. & Edenberg, H., Jan 17 2017, Proceedings - 2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016. Institute of Electrical and Electronics Engineers Inc., p. 167-173 7 p. 7822513

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Pattern Discovery from Directional High-Order Drug-Drug Interaction Relations

Ning, X., Schleyer, T., Shen, L. & Li, L., Sep 8 2017, Proceedings - 2017 IEEE International Conference on Healthcare Informatics, ICHI 2017. Cummins, M., Facelli, J., Meixner, G., Giraud-Carrier, C. & Nakajima, H. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 154-162 9 p. 8031143. (Proceedings - 2017 IEEE International Conference on Healthcare Informatics, ICHI 2017).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Predicting High-Order Directional Drug-Drug Interaction Relations

Ning, X., Shen, L. & Li, L., Sep 8 2017, Proceedings - 2017 IEEE International Conference on Healthcare Informatics, ICHI 2017. Cummins, M., Facelli, J., Meixner, G., Giraud-Carrier, C. & Nakajima, H. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 556-561 6 p. 8031212. (Proceedings - 2017 IEEE International Conference on Healthcare Informatics, ICHI 2017).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations
2016

Mass graphs and their applications in top-down proteomics

Kou, Q., Wu, S., Tolić, N., Liu, Y., Paša-Tolić, L. & Liu, X., 2016, Algorithms in Bioinformatics - 16th International Workshop, WABI 2016, Proceedings. Springer Verlag, Vol. 9838. p. XII (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9838).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2014

Mining massive SNP data for identifying associated SNPs and uncovering gene relationships

Webb, A., Albin, A., Ye, Z., Rastegar-Mojarad, M., Huang, K., Parvin, J., Sadee, W., Li, L., Lin, S. & Xiang, Y., Sep 20 2014, ACM BCB 2014 - 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 304-313 10 p. (ACM BCB 2014 - 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2012

Automatic segmentation and analysis of fibrin networks in 3D confocal microscopy images

Liu, X., Mu, J., Machlus, K. R., Wolberg, A. S., Rosen, E. D., Xu, Z., Alber, M. S. & Chen, D. Z., May 14 2012, Medical Imaging 2012: Image Processing. 831439. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8314).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations
2011

An ERα/modulator regulatory network in the breast cancer cells

Wu, H. Y., Wang, Y., Zheng, P., Jiang, G., Liu, Y., Huang, T. H. M., Nephew, K. P. & Li, L., Dec 1 2011, Proceedings 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS'11. p. 5-8 4 p. 6169427. (Proceedings - IEEE International Workshop on Genomic Signal Processing and Statistics).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Empirical Bayes model comparisons for differential methylation analysis

Teng, M., Wang, Y., Liu, Y., Kim, S., Balch, C., Nephew, K. P. & Li, L., 2011, Proceedings 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS'11. IEEE Computer Society, p. 9-12 4 p. 6169428. (Proceedings - IEEE International Workshop on Genomic Signal Processing and Statistics).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Extraction of drug-drug interactions using all paths graph kernel

Karnik, S., Subhadarshini, A., Wang, Z., Rocha, L. M. & Li, L., 2011, CEUR Workshop Proceedings. Vol. 761. p. 83-88 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Predicting Parkinson's disease related genes using frequent gene co-expression analysis

Zhang, J., Ni, S., Parvin, J., Yang, Y. & Huang, K., 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 1042-1044 3 p. 6112554. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations
2010

A framework for 3D analysis of facial morphology in fetal alcohol syndrome

Wan, J., Shen, L., Fang, S., McLaughlin, J., Autti-Rämö, I., Fagerlund, Å., Riley, E., Hoyme, H. E., Moore, E. S. & Foroud, T., Nov 9 2010, Medical Imaging and Augmented Reality - 5th International Workshop, MIAR 2010, Proceedings. p. 118-127 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6326 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

Interactive feature visualization and detection for 3D face classification

McLaughlin, J., Fang, S., Huang, J., Jacobson, S., Hoyme, H. E., Robinson, L. & Foroud, T., Dec 13 2010, Proceedings of the 9th IEEE International Conference on Cognitive Informatics, ICCI 2010. p. 160-167 8 p. 5599748. (Proceedings of the 9th IEEE International Conference on Cognitive Informatics, ICCI 2010).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2009

Combined experimental and simulation study of blood clot formation

Xu, Z., Lioi, J., Alber, M., Mu, J., Liu, X., Chen, D. Z., Kamocka, M. M. & Rosen, E. D., Dec 1 2009, TIC-STH'09: 2009 IEEE Toronto International Conference - Science and Technology for Humanity. p. 357-362 6 p. 5444476. (TIC-STH'09: 2009 IEEE Toronto International Conference - Science and Technology for Humanity).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

8 Scopus citations

Enabling data analysis on high-throughput data in large data depository using web-based analysis platform - A case study on integrating QUEST with GenePattern in epigenetics research

Camerlengo, T., Ozer, H. G., Yan, P., Parvin, J., Huang, T., Huang, K., Teng, M., Li, L., Liu, Y., Perez, F. & Kurc, T., Dec 1 2009, 2009 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2009. p. 392-395 4 p. 5341750. (2009 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2009).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Flow-through electroporation for large-volume transfection of cells

Geng, T., Zhan, Y., Wang, H. Y., Witting, S. R., Cornetta, K. & Lu, C., 2009, AIChE Annual Meeting, Conference Proceedings.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Segmentation, reconstruction, and analysis of blood thrombi in 2-photon microscopy images

Mu, J., Liu, X., Kamocka, M. M., Xu, Z., Alber, M. S., Rosen, E. D. & Chen, D. Z., Nov 23 2009, 2009 22nd IEEE International Symposium on Computer-Based Medical Systems, CBMS 2009. 5255347. (Proceedings - IEEE Symposium on Computer-Based Medical Systems).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations

xIP-seq platform: An integrative framework for high-throughput sequencing data analysis

Wang, X., Teng, M., Wang, G., Zhao, Y., Han, X., Feng, W., Li, L., Sanford, J. & Liu, Y., Nov 2 2009, OCCBIO'09: 2009 Ohio Collaborative Conference on Bioinformatics. p. 26-31 6 p. 5159156. (OCCBIO'09: 2009 Ohio Collaborative Conference on Bioinformatics).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations
2008

Model-based prediction of cis-acting RNA elements regulating tissue-specifc alternative splicing

Wang, X., Wang, K., Wang, G., Sanford, J. R. & Liu, Y., Dec 1 2008, 8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008. 4696675. (8th IEEE International Conference on BioInformatics and BioEngineering, BIBE 2008).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations
2007

A multinational deployment of 3D laser scanning to study craniofacial dysmorphology in fetal alcohol spectrum disorders

Rogers, J., Wernert, E., Moore, E., Ward, R., Wetherill, L. F. & Foroud, T., Jan 1 2007, Proceedings of SPIE-IS and T Electronic Imaging - Videometrics IX. SPIE, 64910I. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 6491).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2005

Discover true association rates in multi-protein complex proteomics data sets

Shen, C., Li, L. & Chen, J. Y., Dec 1 2005, Proceedings - 2005 IEEE Computational SystemsBioinformatics Conference, CSB 2005. p. 167-174 8 p. 1498018. (Proceedings - 2005 IEEE Computational Systems Bioinformatics Conference, CSB 2005; vol. 2005).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations
2003

Regulating gene expression using optimal control theory

Liu, Y., Sun, H. B. & Yokota, H., Jan 1 2003, Proceedings - 3rd IEEE Symposium on BioInformatics and BioEngineering, BIBE 2003. Institute of Electrical and Electronics Engineers Inc., p. 313-318 6 p. 1188968. (Proceedings - 3rd IEEE Symposium on BioInformatics and BioEngineering, BIBE 2003).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations