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A family-based analysis of whether the functional promoter alleles of the serotonin transporter gene HTT affect the risk for alcohol dependence

Edenberg, H. J., Reynolds, J., Koller, D. L., Begleiter, H., Bucholz, K. K., Conneally, P. M., Crowe, R., Goate, A., Hesselbrock, V., Li, T. K., Nurnberger, J. I., Porjesz, B., Reich, T., Rice, J. P., Schuckit, M., Tischfield, J. A. & Foroud, T., Aug 1998, In : Alcoholism: Clinical and Experimental Research. 22, 5, p. 1080-1085 6 p.

Research output: Contribution to journalArticle

84 Scopus citations

A framework for human microbiome research

Methé, B. A., Nelson, K. E., Pop, M., Creasy, H. H., Giglio, M. G., Huttenhower, C., Gevers, D., Petrosino, J. F., Abubucker, S., Badger, J. H., Chinwalla, A. T., Earl, A. M., Fitzgerald, M. G., Fulton, R. S., Hallsworth-Pepin, K., Lobos, E. A., Madupu, R., Magrini, V., Martin, J. C., Mitreva, M. & 228 others, Muzny, D. M., Sodergren, E. J., Versalovic, J., Wollam, A. M., Worley, K. C., Wortman, J. R., Young, S. K., Zeng, Q., Aagaard, K. M., Abolude, O. O., Allen-Vercoe, E., Alm, E. J., Alvarado, L., Andersen, G. L., Anderson, S., Appelbaum, E., Arachchi, H. M., Armitage, G., Arze, C. A., Ayvaz, T., Baker, C. C., Begg, L., Belachew, T., Bhonagiri, V., Bihan, M., Blaser, M. J., Bloom, T., Bonazzi, V. R., Brooks, P., Buck, G. A., Buhay, C. J., Busam, D. A., Campbell, J. L., Canon, S. R., Cantarel, B. L., Chain, P. S., Chen, I. M. A., Chen, L., Chhibba, S., Chu, K., Ciulla, D. M., Clemente, J. C., Clifton, S. W., Conlan, S., Crabtree, J., Cutting, M. A., Davidovics, N. J., Davis, C. C., Desantis, T. Z., Deal, C., Delehaunty, K. D., Dewhirst, F. E., Deych, E., Ding, Y., Dooling, D. J., Dugan, S. P., Michael Dunne, W., Scott Durkin, A., Edgar, R. C., Erlich, R. L., Farmer, C. N., Farrell, R. M., Faust, K., Feldgarden, M., Felix, V. M., Fisher, S., Fodor, A. A., Forney, L., Foster, L., Di Francesco, V., Friedman, J., Friedrich, D. C., Fronick, C. C., Fulton, L. L., Gao, H., Garcia, N., Giannoukos, G., Giblin, C., Giovanni, M. Y., Goldberg, J. M., Goll, J., Gonzalez, A., Griggs, A., Gujja, S., Haas, B. J., Hamilton, H. A., Harris, E. L., Hepburn, T. A., Herter, B., Hoffmann, D. E., Holder, M. E., Howarth, C., Huang, K. H., Huse, S. M., Izard, J., Jansson, J. K., Jiang, H., Jordan, C., Joshi, V., Katancik, J. A., Keitel, W. A., Kelley, S. T., Kells, C., Kinder-Haake, S., King, N. B., Knight, R., Knights, D., Kong, H. H., Koren, O., Koren, S., Kota, K. C., Kovar, C. L., Kyrpides, N. C., La Rosa, P. S., Lee, S. L., Lemon, K. P., Lennon, N., Lewis, C. M., Lewis, L., Ley, R. E., Li, K., Liolios, K., Liu, B., Liu, Y., Lo, C. C., Lozupone, C. A., Dwayne Lunsford, R., Madden, T., Mahurkar, A. A., Mannon, P. J., Mardis, E. R., Markowitz, V. M., Mavrommatis, K., McCorrison, J. M., McDonald, D., McEwen, J., McGuire, A. L., McInnes, P., Mehta, T., Mihindukulasuriya, K. A., Miller, J. R., Minx, P. J., Newsham, I., Nusbaum, C., O'Laughlin, M., Orvis, J., Pagani, I., Palaniappan, K., Patel, S. M., Pearson, M., Peterson, J., Podar, M., Pohl, C., Pollard, K. S., Priest, M. E., Proctor, L. M., Qin, X., Raes, J., Ravel, J., Reid, J. G., Rho, M., Rhodes, R., Riehle, K. P., Rivera, M. C., Rodriguez-Mueller, B., Rogers, Y. H., Ross, M. C., Russ, C., Sanka, R. K., Sankar, P., Fah Sathirapongsasuti, J., Schloss, J. A., Schloss, P. D., Schmidt, T. M., Scholz, M., Schriml, L., Schubert, A. M., Segata, N., Segre, J. A., Shannon, W. D., Sharp, R. R., Sharpton, T. J., Shenoy, N., Sheth, N. U., Simone, G. A., Singh, I., Smillie, C. S., Sobel, J. D., Sommer, D. D., Spicer, P., Sutton, G. G., Sykes, S. M., Tabbaa, D. G., Thiagarajan, M., Tomlinson, C. M., Torralba, M., Treangen, T. J., Truty, R. M., Vishnivetskaya, T. A., Walker, J., Wang, L., Wang, Z., Ward, D. V., Warren, W., Watson, M. A., Wellington, C., Wetterstrand, K. A., White, J. R., Wilczek-Boney, K., Qing Wu, Y., Wylie, K. M., Wylie, T., Yandava, C., Ye, L., Ye, Y., Yooseph, S., Youmans, B. P., Zhang, L., Zhou, Y., Zhu, Y., Zoloth, L., Zucker, J. D., Birren, B. W., Gibbs, R. A., Highlander, S. K., Weinstock, G. M., Wilson, R. K. & White, O., Jun 14 2012, In : Nature. 486, 7402, p. 215-221 7 p.

Research output: Contribution to journalArticle

1243 Scopus citations

A GABRA2 polymorphism improves a model for prediction of drinking initiation

Kuperman, S., Chan, G., Kramer, J., Wetherill, L., Acion, L., Edenberg, H. J., Foroud, T. M., Nurnberger, J., Agrawal, A., Anokhin, A., Brooks, A., Hesselbrock, V., Hesselbrock, M., Schuckit, M., Tischfield, J. & Liu, X., Sep 2017, In : Alcohol. 63, p. 1-8 8 p.

Research output: Contribution to journalArticle

2 Scopus citations

Age at intracranial aneurysm rupture among generations: Familial Intracranial Aneurysm Study

Woo, D., Hornung, R., Sauerbeck, L., Brown, R., Meissner, I., Huston, J., Foroud, T. & Broderick, J., Jul 24 2009, In : Neurology. 72, 8, p. 695-698 4 p.

Research output: Contribution to journalArticle

9 Scopus citations

A genome screen of maximum number of drinks as an alcoholism phenotype

Saccone, N. L., Kwon, J. M., Corbett, J., Goate, A., Rochberg, N., Edenberg, H. J., Foroud, T., Li, T. K., Begleiter, H., Reich, T. & Rice, J. P., Oct 9 2000, In : American Journal of Medical Genetics - Neuropsychiatric Genetics. 96, 5, p. 632-637 6 p.

Research output: Contribution to journalArticle

177 Scopus citations

A genome-wide association study of alcohol-dependence symptom counts in extended pedigrees identifies C15orf53

Wang, J. C., Foroud, T., Hinrichs, A. L., Le, N. X. H., Bertelsen, S., Budde, J. P., Harari, O., Koller, D. L., Wetherill, L., Agrawal, A., Almasy, L., Brooks, A. I., Bucholz, K., Dick, D., Hesselbrock, V., Johnson, E. O., Kang, S., Kapoor, M., Kramer, J., Kuperman, S. & 17 others, Madden, P. A. F., Manz, N., Martin, N. G., McClintick, J. N., Montgomery, G. W., Nurnberger, J. I., Rangaswamy, M., Rice, J., Schuckit, M., Tischfield, J. A., Whitfield, J. B., Xuei, X., Porjesz, B., Heath, A. C., Edenberg, H. J., Bierut, L. J. & Goate, A. M., Nov 1 2013, In : Molecular Psychiatry. 18, 11, p. 1218-1224 7 p.

Research output: Contribution to journalArticle

57 Scopus citations

A genome-wide association study of bipolar disorder with comorbid eating disorder replicates the SOX2-OT region

Bipolar Genome Study (BiGS), Jan 1 2016, In : Journal of Affective Disorders. 189, p. 141-149 9 p., 7712.

Research output: Contribution to journalArticle

24 Scopus citations

A genome wide association study of fast beta EEG in families of European ancestry

Meyers, J. L., Zhang, J., Manz, N., Rangaswamy, M., Kamarajan, C., Wetherill, L., Chorlian, D. B., Kang, S. J., Bauer, L., Hesselbrock, V., Kramer, J., Kuperman, S., Nurnberger, J. I., Tischfield, J., Wang, J. C., Edenberg, H. J., Goate, A., Foroud, T. & Porjesz, B., May 1 2017, In : International Journal of Psychophysiology. 115, p. 74-85 12 p.

Research output: Contribution to journalArticle

4 Scopus citations

A genome-wide association study of interhemispheric theta EEG coherence: implications for neural connectivity and alcohol use behavior

Meyers, J. L., Zhang, J., Chorlian, D. B., Pandey, A. K., Kamarajan, C., Wang, J. C., Wetherill, L., Lai, D., Chao, M., Chan, G., Kinreich, S., Kapoor, M., Bertelsen, S., McClintick, J., Bauer, L., Hesselbrock, V., Kuperman, S., Kramer, J., Salvatore, J. E., Dick, D. M. & 5 others, Agrawal, A., Foroud, T., Edenberg, H. J., Goate, A. & Porjesz, B., 2020, (Accepted/In press) In : Molecular Psychiatry.

Research output: Contribution to journalArticle

A genome-wide screen for genes influencing conduct disorder

Dick, D. M., Li, T. K., Edenberg, H. J., Hesselbrock, V., Kramer, J., Kuperman, S., Porjesz, B., Bucholz, K., Goate, A., Nurnberger, J. & Foroud, T., Feb 17 2004, In : Molecular Psychiatry. 9, 1, p. 81-86 6 p.

Research output: Contribution to journalArticle

73 Scopus citations

A genome-wide search for genes that relate to a low level of response to alcohol

Schuckit, M. A., Edenberg, H. J., Kalmijn, J., Flury, L., Smith, T. L., Reich, T., Bierut, L., Goate, A. & Foroud, T., Jan 1 2001, In : Alcoholism: Clinical and Experimental Research. 25, 3, p. 323-329 7 p.

Research output: Contribution to journalArticle

153 Scopus citations

A Genomic Scan for Habitual Smoking in Families of Alcoholics: Common and Specific Genetic Factors in Substance Dependence

Bierut, L. J., Rice, J. P., Goate, A., Hinrichs, A. L., Saccone, N. L., Foroud, T., Edenberg, H. J., Cloninger, C. R., Begleiter, H., Conneally, P. M., Crowe, R. R., Hesselbrock, V., Li, T. K., Nurnberger, J. I., Porjesz, B., Schuckit, M. A. & Reich, T., Jan 1 2004, In : American Journal of Medical Genetics. 124 A, 1, p. 19-27 9 p.

Research output: Contribution to journalArticle

101 Scopus citations

Age-related changes in MicroRNA expression and pharmacogenes in human liver

Burgess, K. S., Philips, S., Benson, E. A., Desta, Z., Gaedigk, A., Gaedigk, R., Segar, M. W., Liu, Y. & Skaar, T. C., Aug 1 2015, In : Clinical Pharmacology and Therapeutics. 98, 2, p. 205-215 11 p.

Research output: Contribution to journalArticle

19 Scopus citations

Age-specific incidence rates for dementia and alzheimer disease in NIA-LOAD/NCRAD and EFIGA families: National Institute on Aging Genetics Initiative for late-onset Alzheimer disease/National Cell Repository for Alzheimer disease (NIA-LOAD/NCRAD) and Estudio Familiar de Influencia Genetica en Alzheimer (EFIGA)

Vardarajan, B. N., Faber, K. M., Bird, T. D., Bennett, D. A., Rosenberg, R., Boeve, B. F., Graff-Radford, N. R., Goate, A. M., Farlow, M., Sweet, R. A., Lantigua, R., Medrano, M. Z., Ottman, R., Schaid, D. J., Foroud, T. M. & Mayeux, R., Mar 2014, In : JAMA Neurology. 71, 3, p. 315-323 9 p.

Research output: Contribution to journalArticle

26 Scopus citations

Ahall polymorphism in human X-linked proteolipid protein gene (PLP)

Trofatter, J. A., Pratt, V. M., Dlouhy, S. R. & Hodes, M. E., Nov 11 1991, In : Nucleic acids research. 19, 21, 1 p.

Research output: Contribution to journalArticle

19 Scopus citations

A hierarchical statistical model to assess the confidence of peptides and proteins inferred from tandem mass spectrometry

Shen, C., Wang, Z., Shankar, G., Zhang, X. & Li, L., Jan 15 2008, In : Bioinformatics. 24, 2, p. 202-208 7 p.

Research output: Contribution to journalArticle

32 Scopus citations

A hierarchy of endothelial colony-forming cell activity displayed by bovine corneal endothelial cells

Huang, L., Harkenrider, M., Thompson, M., Zeng, P., Tanaka, H., Gilley, D., Ingram, D. A., Bonanno, J. A. & Yoder, M. C., Aug 2010, In : Investigative Ophthalmology and Visual Science. 51, 8, p. 3943-3949 7 p.

Research output: Contribution to journalArticle

13 Scopus citations

A homozygous missense mutation in human KLOTHO causes severe tumoral calcinosis

Ichikawa, S., Imel, E. A., Kreiter, M. L., Yu, X., Mackenzie, D. S., Sorenson, A. H., Goetz, R., Mohammadi, M., White, K. E. & Econs, M. J., Sep 4 2007, In : Journal of Clinical Investigation. 117, 9, p. 2684-2691 8 p.

Research output: Contribution to journalArticle

302 Scopus citations

A homozygous missense mutation in human KLOTHO causes severe tumoral calcinosis.

Ichikawa, S., Imel, E. A., Kreiter, M. L., Yu, X., Mackenzie, D. S., Sorenson, A. H., Goetz, R., Mohammadi, M., White, K. E. & Econs, M. J., Jan 1 2007, In : Journal of musculoskeletal & neuronal interactions. 7, 4, p. 318-319 2 p.

Research output: Contribution to journalArticle

41 Scopus citations

A human DAZ transgene confers partial rescue of the mouse Dazl null phenotype

Slee, R., Grimes, B., Speed, R. M., Taggart, M., Maguire, S. M., Ross, A., McGill, N. I., Saunders, P. T. K. & Cooke, H. J., Jul 6 1999, In : Proceedings of the National Academy of Sciences of the United States of America. 96, 14, p. 8040-8045 6 p.

Research output: Contribution to journalArticle

93 Scopus citations

AKT alters genome-wide estrogen receptor α binding and impacts estrogen signaling in breast cancer

Bhat-Nakshatri, P., Wang, G., Appaiah, H., Luktuke, N., Carroll, J. S., Geistlinger, T. R., Brown, M., Badve, S., Liu, Y. & Nakshatri, H., Dec 1 2008, In : Molecular and cellular biology. 28, 24, p. 7487-7503 17 p.

Research output: Contribution to journalArticle

67 Scopus citations

Alcohol Alters DNA Methylation Patterns and Inhibits Neural Stem Cell Differentiation

Zhou, F. C., Balaraman, Y., Teng, M., Liu, Y., Singh, R. P. & Nephew, K. P., Apr 1 2011, In : Alcoholism: Clinical and Experimental Research. 35, 4, p. 735-746 12 p.

Research output: Contribution to journalArticle

108 Scopus citations

Alcohol dehydrogenase-2*2 allele is associated with decreased prevalence of fetal alcohol syndrome in the mixed-ancestry population of the Western Cape Province, South Africa

Viljoen, D. L., Carr, L. G., Foroud, T. M., Brooke, L., Ramsay, M. & Li, T. K., Jan 1 2001, In : Alcoholism: Clinical and Experimental Research. 25, 12, p. 1719-1722 4 p.

Research output: Contribution to journalArticle

73 Scopus citations

Alcohol exposure alters DNA methylation profiles in mouse embryos at early neurulation

Liu, Y., Balaraman, Y., Wang, G., Nephew, K. P. & Zhou, F. C., Oct 1 2009, In : Epigenetics. 4, 7, p. 500-511 12 p.

Research output: Contribution to journalArticle

167 Scopus citations

Alcoholism susceptibility loci: Confirmation studies in a replicate sample and further mapping

Foroud, T., Edenberg, H. J., Goate, A., Rice, J., Flury, L., Koller, D. L., Bierut, L. J., Conneally, P. M., Nurnberger, J. I., Bucholz, K. K., Li, T. K., Hesselbrock, V., Crowe, R., Schuckit, M., Porjesz, B., Begleiter, H. & Reich, T., Jul 2000, In : Alcoholism: Clinical and Experimental Research. 24, 7, p. 933-945 13 p.

Research output: Contribution to journalArticle

209 Scopus citations

Alcohol-preferring rats show decreased corticotropin-releasing hormone-2 receptor expression and differences in hpa activation compared to alcohol-nonpreferring rats

Yong, W., Spence, J. P., Eskay, R., Fitz, S. D., Damadzic, R., Lai, D., Foroud, T., Carr, L. G., Shekhar, A., Chester, J. A., Heilig, M. & Liang, T., May 2014, In : Alcoholism: Clinical and Experimental Research. 38, 5, p. 1275-1283 9 p.

Research output: Contribution to journalArticle

14 Scopus citations

Allele-specific expression and high-throughput reporter assay reveal functional genetic variants associated with alcohol use disorders

Rao, X., Thapa, K. S., Chen, A. B., Lin, H., Gao, H., Reiter, J. L., Hargreaves, K. A., Ipe, J., Lai, D., Xuei, X., Wang, Y., Gu, H., Kapoor, M., Farris, S. P., Tischfield, J., Foroud, T., Goate, A. M., Skaar, T. C., Mayfield, R. D., Edenberg, H. J. & 1 others, Liu, Y., Jan 1 2019, (Accepted/In press) In : Molecular Psychiatry.

Research output: Contribution to journalArticle

1 Scopus citations

Allelic analysis on chromosome 5 in sporadic colorectal cancer patients

Zhang, F., Zhou, C., Ling, Y., Qiu, G., Bai, S., Liu, W., He, L. & Peng, Z., Sep 2002, In : Zhonghua zhong liu za zhi [Chinese journal of oncology]. 24, 5, p. 458-460 3 p.

Research output: Contribution to journalArticle

8 Scopus citations

Allelic-based gene-gene interaction associated with quantitative traits

Jung, J., Sun, B., Kwon, D., Koller, D. L. & Foroud, T. M., Jun 8 2009, In : Genetic epidemiology. 33, 4, p. 332-343 12 p.

Research output: Contribution to journalArticle

12 Scopus citations

A locus for congenital preauricular fistula maps to chromosome 8q11.1-q13.3

Zou, F., Peng, Y., Wang, X., Sun, A., Liu, W., Bai, S., Zhu, H., Gao, B., Feng, G. & He, L., 2003, In : Journal of Human Genetics. 48, 3, p. 155-158 4 p.

Research output: Contribution to journalArticle

Open Access
20 Scopus citations

Alteration of gene expression by alcohol exposure at early neurulation

Zhou, F. C., Zhao, Q., Liu, Y., Goodlett, C. R., Liang, T., McClintick, J. N., Edenberg, H. J. & Li, L., Feb 21 2011, In : BMC genomics. 12, 124.

Research output: Contribution to journalArticle

59 Scopus citations
26 Scopus citations

Altered expression of telomere-associated genes in leukocytes among BRCA1 and BRCA2 carriers

Tanaka, H., Phipps, E. A., Wei, T., Wu, X., Goswami, C., Liu, Y., Sledge, G. W., Mina, L. & Herbert, B. S., Apr 2018, In : Molecular Carcinogenesis. 57, 4, p. 567-575 9 p.

Research output: Contribution to journalArticle

2 Scopus citations

Altered mRNA splicing in SMN-depleted motor neuron-like cells

Custer, S. K., Gilson, T. D., Li, H., Todd, A. G., Astroski, J. W., Lin, H., Liu, Y. & Androphy, E. J., Oct 2016, In : PLoS ONE. 11, 10, e0163954.

Research output: Contribution to journalArticle

8 Scopus citations

Altered renal FGF23-mediated activity involving MAPK and Wnt: Effects of the Hyp mutation

Farrow, E. G., Summers, L. J., Schiavi, S. C., McCormick, J. A., Ellison, D. H. & White, K. E., Oct 2010, In : Journal of Endocrinology. 207, 1, p. 67-75 9 p.

Research output: Contribution to journalArticle

37 Scopus citations

Altered responses to potassium in cerebellar neurons from weaver heterozygote mice

Fox, A. P., Dlouhy, S., Ghetti, B., Hurley, J. H., Nucifora, P. G. P., Nelson, D. J., Won, L. & Heller, A., Nov 30 1998, In : Experimental Brain Research. 123, 3, p. 298-306 9 p.

Research output: Contribution to journalArticle

6 Scopus citations

Alternate receptor usage of neuropilin-1 and glucose transporter protein 1 by the human T cell leukemia virus type 1

Jin, Q., Alkhatib, B., Cornetta, K. & Alkhatib, G., Jan 20 2010, In : Virology. 396, 2, p. 203-212 10 p.

Research output: Contribution to journalArticle

15 Scopus citations

Alternative splicing in bone following mechanical loading

Mantila Roosa, S. M., Liu, Y. & Turner, C. H., Mar 1 2011, In : Bone. 48, 3, p. 543-551 9 p.

Research output: Contribution to journalArticle

11 Scopus citations

Alt Event Finder: a tool for extracting alternative splicing events from RNA-seq data.

Zhou, A., Breese, M. R., Hao, Y., Edenberg, H. J., Li, L., Skaar, T. C. & Liu, Y., 2012, In : Unknown Journal. 13 Suppl 8

Research output: Contribution to journalArticle

16 Scopus citations

AluY-mediated germline deletion, duplication and somatic stem cell reversion in UBE2T defines a new subtype of Fanconi anemia

Virts, E. L., Jankowska, A., Mackay, C., Glaas, M. F., Wiek, C., Kelich, S. L., Lottmann, N., Kennedy, F. M., Marchal, C., Lehnert, E., Scharf, R. E., Dufour, C., Lanciotti, M., Farruggia, P., Santoro, A., Savasan, S., Scheckenbach, K., Schipper, J., Wagenmann, M., Lewis, T. & 12 others, Leffak, M., Farlow, J. L., Foroud, T. M., Honisch, E., Niederacher, D., Chakraborty, S. C., Vance, G. H., Pruss, D., Timms, K. M., Lanchbury, J. S., Alpi, A. F. & Hanenberg, H., Apr 9 2015, In : Human molecular genetics. 24, 18, p. 5093-5108 16 p.

Research output: Contribution to journalArticle

42 Scopus citations

Alzheimer's Disease Neuroimaging Initiative biomarkers as quantitative phenotypes: Genetics core aims, progress, and plans

Saykin, A. J., Shen, L., Foroud, T. M., Potkin, S. G., Swaminathan, S., Kim, S., Risacher, S. L., Nho, K., Huentelman, M. J., Craig, D. W., Thompson, P. M., Stein, J. L., Moore, J. H., Farrer, L. A., Green, R. C., Bertram, L., Jack, C. R. & Weiner, M. W., May 2010, In : Alzheimer's and Dementia. 6, 3, p. 265-273 9 p.

Research output: Contribution to journalArticle

215 Scopus citations

Alzheimer's disease risk polymorphisms regulate gene expression in the ZCWPW1 and the CELF1 loci

Alzheimer's Disease Genetics Consortium (ADGC), Feb 2016, In : PloS one. 11, 2, e0148717.

Research output: Contribution to journalArticle

33 Scopus citations

Alzheimer's Disease Sequencing Project discovery and replication criteria for cases and controls: Data from a community-based prospective cohort study with autopsy follow-up

Crane, P. K., Foroud, T., Montine, T. J. & Larson, E. B., Dec 2017, In : Alzheimer's and Dementia. 13, 12, p. 1410-1413 4 p.

Research output: Contribution to journalArticle

3 Scopus citations

A male child with the rumpshaker mutation, X-linked spastic paraplegia/Pelizaeus-Merzbacher disease and lysinuria

Naidu, S., Dlouhy, S. R., Geraghty, M. T. & Hodes, M. E., Dec 4 1997, In : Journal of Inherited Metabolic Disease. 20, 6, p. 811-816 6 p.

Research output: Contribution to journalArticle

15 Scopus citations

A mass graph-based approach for the identification of modified proteoforms using top-down tandem mass spectra

Kou, Q., Wu, S., Tolić, N., Paša-Tolić, L., Liu, Y. & Liu, X., May 1 2017, In : Bioinformatics. 33, 9, p. 1309-1316 8 p.

Research output: Contribution to journalArticle

11 Scopus citations

A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks

Kapoor, M., Wang, J. C., Wetherill, L., Le, N., Bertelsen, S., Hinrichs, A. L., Budde, J., Agrawal, A., Bucholz, K., Dick, D., Harari, O., Hesselbrock, V., Kramer, J., Nurnberger, J. I., Rice, J., Saccone, N., Schuckit, M., Tischfield, J., Porjesz, B., Edenberg, H. J. & 3 others, Bierut, L., Foroud, T. & Goate, A., Oct 1 2013, In : Human genetics. 132, 10, p. 1141-1151 11 p.

Research output: Contribution to journalArticle

52 Scopus citations

A mixture model approach in gene-gene and gene-environmental interactions for binary phenotypes

Li, L., Yu, M., Jason, R. D., Shen, C., Azzouz, F., McLeod, H. L., Borges-Gonzales, S., Nguyen, A., Skaar, T., Desta, Z., Sweeney, C. J. & Flockhart, D. A., Nov 1 2008, In : Journal of biopharmaceutical statistics. 18, 6, p. 1150-1177 28 p.

Research output: Contribution to journalArticle

3 Scopus citations

A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-α

Li, L., Cheng, A. S. L., Jin, V. X., Paik, H. H., Fan, M., Li, X., Zhang, W., Robarge, J., Balch, C., Davuluri, R. V., Kim, S., Huang, T. H. M. & Nephew, K. P., Sep 15 2006, In : Bioinformatics. 22, 18, p. 2210-2216 7 p.

Research output: Contribution to journalArticle

11 Scopus citations

AML1-FOG2 fusion protein in myelodysplasia

Chan, E. M., Comer, E. M., Brown, F. C., Richkind, K. E., Holmes, M. L., Chong, B. H., Shiffman, R., Zhang, D. E., Slovak, M. L., Willman, C. L., Noguchi, C. T., Li, Y., Heiber, D. J., Kwan, L., Chan, R. J., Vance, G. H., Ramsey, H. C. & Hromas, R. A., Jun 1 2005, In : Blood. 105, 11, p. 4523-4526 4 p.

Research output: Contribution to journalArticle

25 Scopus citations

A modulated empirical Bayes model for identifying topological and temporal estrogen receptor α regulatory networks in breast cancer

Shen, C., Huang, Y., Liu, Y., Wang, G., Zhao, Y., Wang, Z., Teng, M., Wang, Y., Flockhart, D. A., Skaar, T. C., Yan, P., Nephew, K. P., Huang, T. H. M. & Li, L., May 9 2011, In : BMC Systems Biology. 5, 67.

Research output: Contribution to journalArticle

24 Scopus citations