Infectious Diseases

Publications

2020

Aetiology and prevalence of mixed-infections and mono-infections in non-gonococcal urethritis in men: A case-control study

Jordan, S. J., Toh, E., Williams, J. A., Fortenberry, L., Lapradd, M. L., Katz, B. P., Batteiger, B. E., Nelson, D. E. & Batteiger, T. A., Jun 1 2020, In : Sexually transmitted infections. 96, 4, p. 306-311 6 p.

Research output: Contribution to journalArticle

1 Scopus citations

Associations of Total, Cognitive/Affective, and Somatic Depressive Symptoms and Antidepressant Use with Cardiovascular Disease-Relevant Biomarkers in HIV: Veterans Aging Cohort Study

Stewart, J. C., Polanka, B. M., So-Armah, K. A., White, J. R., Gupta, S. K., Kundu, S., Chang, C. C. H. & Freiberg, M. S., Jun 1 2020, In : Psychosomatic Medicine. 82, 5, p. 1-10 10 p.

Research output: Contribution to journalArticle

Detection of types of HPV among HIV-infected and HIV-uninfected Kenyan women undergoing cryotherapy or loop electrosurgical excision procedure

Orang’o, E. O., Emont, J. P., Ermel, A. C., Liu, T., Omodi, V., Tong, Y., Itsura, P. M., Tonui, P. K., Maina, T., Ong’echa, J. M., Muthoka, K., Kiptoo, S., Moormann, A., Hogan, J., Loehrer, P. J., Brown, D. & Cu-Uvin, S., 2020, (Accepted/In press) In : International Journal of Gynecology and Obstetrics. 151, 2, p. 279-286 8 p.

Research output: Contribution to journalArticle

Development of a SimpleProbe real-Time PCR Assay for rapid detection and identification of the US novel urethrotropic clade of Neisseria meningitidis ST-11 (US_NmUC)

Toh, E., Williams, J. A., Qadadri, B., Ermel, A. & Nelson, D. E., Feb 1 2020, In : PloS one. 15, 2, e0228467.

Research output: Contribution to journalArticle

Open Access
Open Access

Elevated cardiac risk score by Atherosclerotic Cardiovascular Disease calculation is associated with albuminuria in older people living with HIV

Johnston, C. D., Ifeagwu, K. C. C., Siegler, E. L., Derry, H., Burchett, C. O., Rice, M. C., Gupta, S. K., Choi, M. E. & Glesby, M. J., May 1 2020, In : AIDS (London, England). 34, 6, p. 947-949 3 p.

Research output: Contribution to journalArticle

Evaluation of the Performance of a Point-of-Care Test for Chlamydia and Gonorrhea

Van Der Pol, B., Taylor, S. N., Mena, L., Lebed, J., McNeil, C. J., Crane, L. S., Ermel, A., Sukhija-Cohen, A. & Gaydos, C. A., May 1 2020, In : JAMA Network Open. 3, 5, p. e204819

Research output: Contribution to journalArticle

Open Access
1 Scopus citations
1 Scopus citations

Impact of Universal Antiretroviral Treatment Eligibility on Rapid Treatment Initiation Among Young Adolescents with Human Immunodeficiency Virus in Sub-Saharan Africa

Tymejczyk, O., Brazier, E., Wools-Kaloustian, K., Davies, M. A., Dilorenzo, M., Edmonds, A., Vreeman, R., Bolton, C., Twizere, C., Okoko, N., Phiri, S., Nakigozi, G., Lelo, P., von Groote, P., Sohn, A. H. & Nash, D., Aug 4 2020, In : The Journal of infectious diseases. 222, 5, p. 755-764 10 p.

Research output: Contribution to journalArticle

Open Access

Improving Notifiable Disease Case Reporting Through Electronic Information Exchange–Facilitated Decision Support: A Controlled Before-and-After Trial

Dixon, B. E., Zhang, Z., Arno, J. N., Revere, D., Joseph Gibson, P. & Grannis, S. J., May 1 2020, In : Public Health Reports. 135, 3, p. 401-410 10 p.

Research output: Contribution to journalArticle

International epidemiology databases to evaluate AIDS (IeDEA) in sub-Saharan Africa, 2012-2019

Chammartin, F., Dao Ostinelli, C. H., Anastos, K., Jaquet, A., Brazier, E., Brown, S., Dabis, F., Davies, M. A., Duda, S. N., Malateste, K., Nash, D., Wools-Kaloustian, K., Von Groote, P. M. & Egger, M., May 15 2020, In : BMJ open. 10, 5, e035246.

Research output: Contribution to journalReview article

Open Access
4 Scopus citations

Intranasal Antiviral Drug Delivery and Coronavirus Disease 2019 (COVID-19): A State of the Art Review

Higgins, T. S., Wu, A. W., Illing, E. A., Sokoloski, K. J., Weaver, B. A., Anthony, B. P., Hughes, N. & Ting, J. Y., Oct 1 2020, In : Otolaryngology - Head and Neck Surgery (United States). 163, 4, p. 682-694 13 p.

Research output: Contribution to journalReview article

Open Access

Longitudinal analysis of naturally acquired PfEMP1 CIDR domain variant antibodies identifies associations with malaria protection

Obeng-Adjei, N., Larremore, D. B., Turner, L., Ongoiba, A., Li, S., Doumbo, S., Yazew, T. B., Kayentao, K., Miller, L. H., Traore, B., Pierce, S. K., Buckee, C. O., Lavstsen, T., Crompton, P. D. & Tran, T. M., Jun 18 2020, In : JCI Insight. 5, 12, 137112.

Research output: Contribution to journalArticle

Open Access

Mortality among people with HIV treated for tuberculosis based on positive, negative, or no bacteriologic test results for tuberculosis: The IEDEA consortium

Humphrey, J. M., Mpofu, P., Pettit, A. C., Musick, B., Carter, E. J., Messou, E., Marcy, O., Crabtree-Ramirez, B., Yotebieng, M., Anastos, K., Sterling, T. R., Yiannoutsos, C., Diero, L. & Wools-Kaloustian, K., Jan 1 2020, In : Open Forum Infectious Diseases. 7, 1

Research output: Contribution to journalArticle

Open Access

Mycoplasma genitalium detection in urogenital specimens from symptomatic and asymptomatic men and women by use of the cobas TV/MG test

Van Der Pol, B., Waites, K. B., Xiao, L., Taylor, S. N., Rao, A., Nye, M., Chavoustie, S., Ermel, A., Kaplan, C., Eisenberg, D., Chan, P. A., Mena, L., Pacheco, S., Krishnamurthy, S., Mohan, R., Bertuzis, R., McGowin, C. L., Arcenas, R. & Marlowe, E. M., Jun 2020, In : Journal of clinical microbiology. 58, 6, e02124-19.

Research output: Contribution to journalArticle

Open Access

Outcomes of second-line antiretroviral therapy among children living with HIV: a global cohort analysis

The Collaborative Initiative for Paediatric HIV Education and Research (CIPHER) Global Cohort Collaboration, Apr 1 2020, In : Journal of the International AIDS Society. 23, 4, e25477.

Research output: Contribution to journalArticle

Open Access

Population point prevalence of SARS-CoV-2 infection based on a statewide random sample - Indiana, April 25-29, 2020

Menachemi, N., Yiannoutsos, C. T., Dixon, B. E., Duszynski, T. J., Fadel, W. F., Wools-Kaloustian, K. K., Needleman, N. U., Box, K., Caine, V., Norwood, C., Weaver, L. & Halverson, P. K., Jul 2020, In : Morbidity and Mortality Weekly Report. 69, 29, p. 960-964 5 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Prevalence, incidence, and natural history of HPV infection in adult women ages 24 to 45 participating in a vaccine trial

Ferris, D. G., Brown, D. R., Giuliano, A. R., Myers, E., Joura, E. A., Garland, S. M., Kjaer, S. K., Perez, G., Saah, A., Luxembourg, A. & Velicer, C., Dec 2020, In : Papillomavirus Research. 10, 100202.

Research output: Contribution to journalArticle

Open Access

PS-SiZer map to investigate significant features of body-weight profile changes in HIV infected patients in the IeDEA Collaboration

Harezlak, J., Sarwat, S., Wools-Kaloustian, K., Schomaker, M., Balestre, E., Law, M., Kiertiburanakul, S., Fox, M., Huisin‘t Veld, D., Musick, B. S. & Yiannoutsos, C. T., May 2020, In : PloS one. 15, 5, e0220165.

Research output: Contribution to journalArticle

Open Access

Qualitative exploration of perceived benefits of care and barriers influencing HIV care in trans Nzoia, Kenya

Naanyu, V., Ruff, J., Goodrich, S., Spira, T., Bateganya, M., Toroitich-Ruto, C., Otieno-Nyunya, B., Siika, A. M. & Wools-Kaloustian, K., Apr 25 2020, In : BMC Health Services Research. 20, 1, 355.

Research output: Contribution to journalArticle

Open Access

Raltegravir use and outcomes among children and adolescents living with HIV in the IeDEA global consortium

Patten, G., Puthanakit, T., McGowan, C. C., Wools-Kaloustian, K., Hazra, R., Pinto, J. A., Machado, D., Succi, R., Sohn, A. H., Rabie, H., Musick, B. & Davies, M. A., Jul 1 2020, In : Journal of the International AIDS Society. 23, 7, e25580.

Research output: Contribution to journalArticle

Open Access

Real-world use of chemotherapy for Kaposi's sarcoma in a large community-based HIV primary care system in Kenya

Freeman, E. E., Busakhala, N., Regan, S., Asirwa, F. C., Wenger, M., Seth, D., Moon, K. C., Semeere, A., Maurer, T., Wools-Kaloustian, K., Bassett, I. & Martin, J., Jan 29 2020, In : BMC Cancer. 20, 1, 71.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

The cost-effectiveness of prophylaxis strategies for individuals with advanced HIV starting treatment in Africa

the REALITY trial team, Mar 1 2020, In : Journal of the International AIDS Society. 23, 3, e25469.

Research output: Contribution to journalArticle

Open Access
2019

A Class I Haemophilus ducreyi Strain Containing a Class II hgbA Allele Is Partially Attenuated in Humans: Implications for HGBA vaccine efficacy trials

Leduc, I., Fortney, K. R., Janowicz, D. M., Zwickl, B., Ellinger, S., Katz, B. P., Lin, H., Dong, Q. & Spinola, S. M., Jan 1 2019, In : Infection and immunity. 87, 7, e00112.

Research output: Contribution to journalArticle

A cross-sectional analysis of factors associated with detection of oncogenic human papillomavirus in human immunodeficiency virus-infected and uninfected Kenyan women

Ermel, A., Tonui, P., Titus, M., Tong, Y., Wong, N., Ong'echa, J., Muthoka, K., Kiptoo, S., Moormann, A., Hogan, J., Mwangi, A., Cu-Uvin, S., Loehrer, P. J., Orang'o, O. & Brown, D., Apr 27 2019, In : BMC Infectious Diseases. 19, 1, 352.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Adaptive NK cells in people exposed to Plasmodium falciparum correlate with protection from malaria

Hart, G. T., Tran, T. M., Theorell, J., Schlums, H., Arora, G., Rajagopalan, S., Jules Sangala, A. D., Welsh, K. J., Traore, B., Pierce, S. K., Crompton, P. D., Bryceson, Y. T. & Long, E. O., Jun 1 2019, In : Journal of Experimental Medicine. 216, 6, p. 1280-1290 11 p.

Research output: Contribution to journalArticle

Open Access
15 Scopus citations

A Molecular Signature in Blood Reveals a Role for p53 in Regulating Malaria-Induced Inflammation

Tran, T. M., Guha, R., Portugal, S., Skinner, J., Ongoiba, A., Bhardwaj, J., Jones, M., Moebius, J., Venepally, P., Doumbo, S., DeRiso, E. A., Li, S., Vijayan, K., Anzick, S. L., Hart, G. T., O’Connell, E. M., Doumbo, O. K., Kaushansky, A., Alter, G., Felgner, P. L. & 5 others, Lorenzi, H., Kayentao, K., Traore, B., Kirkness, E. F. & Crompton, P. D., Oct 15 2019, In : Immunity. 51, 4, p. 750

Research output: Contribution to journalArticle

6 Scopus citations

Changes in rapid hiv treatment initiation after national “treat all” policy adoption in 6 sub-saharan african countries: Regression discontinuity analysis

Tymejczyk, O., Brazier, E., Yiannoutsos, C. T., Vinikoor, M., van Lettow, M., Nalugoda, F., Urassa, M., Sinayobye, J. DA., Rebeiro, P. F., Wools-Kaloustian, K., Davies, M. A., Zaniewski, E., Anderegg, N., Liu, G., Ford, N. & Nash, D., Jun 2019, In : PLoS Medicine. 16, 6, e1002822.

Research output: Contribution to journalArticle

Open Access
10 Scopus citations

Comparisons of human immunodeficiency virus type 1 envelope variants in blood and genital fluids near the time of male-to-female transmission

Partners in Prevention HSV/HIV Transmission Study Team, Jan 1 2019, In : Journal of virology. 93, 13, e01769-18.

Research output: Contribution to journalArticle

2 Scopus citations

Decline in vaccine-type human papillomavirus prevalence in young men from a Midwest metropolitan area of the United States over the six years after vaccine introduction

Widdice, L. E., Bernstein, D. I., Franco, E. L., Ding, L., Brown, D. R., Ermel, A. C., Higgins, L. & Kahn, J. A., Oct 23 2019, In : Vaccine. 37, 45, p. 6832-6841 10 p.

Research output: Contribution to journalArticle

2 Scopus citations

Decoding the complexities of human malaria through systems immunology

Tran, T. M. & Crompton, P. D., Nov 3 2019, In : Immunological Reviews. 293

Research output: Contribution to journalReview article

Decoding the complexities of human malaria through systems immunology

Tran, T. M. & Crompton, P. D., Jan 1 2019, (Accepted/In press) In : Immunological Reviews.

Research output: Contribution to journalReview article

1 Scopus citations

Depression and all-cause mortality risk in HIV-infected and HIV-uninfected US veterans: a cohort study

So-Armah, K., Gupta, S. K., Kundu, S., Stewart, J. C., Goulet, J. L., Butt, A. A., Sico, J. J., Marconi, V. C., Crystal, S., Rodriguez-Barradas, M. C., Budoff, M., Gibert, C. L., Chang, C. C. H., Bedimo, R. & Freiberg, M. S., May 2019, In : HIV Medicine. 20, 5, p. 317-329 13 p.

Research output: Contribution to journalArticle

1 Scopus citations

Detection and Concentration of Plasma Aflatoxin Is Associated with Detection of Oncogenic Human Papillomavirus in Kenyan Women

Zhang, J., Orang'O, O., Tonui, P., Tong, Y., Maina, T., Kiptoo, S., Muthoka, K., Groopman, J., Smith, J., Madeen, E., Ermel, A., Loehrer, P. & Brown, D. R., Oct 5 2019, In : Open Forum Infectious Diseases. 6, 9, ofz354.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Detection of rectal chlamydia trachomatis in heterosexual men who report cunnilingus

Batteiger, T. A., Jordan, S. J., Toh, E., Fortenberry, L., Williams, J. A., Lapradd, M., Katz, B., Fortenberry, J. D., Dodge, B., Arno, J., Batteiger, B. E. & Nelson, D. E., Jul 1 2019, In : Sexually transmitted diseases. 46, 7, p. 440-445 6 p.

Research output: Contribution to journalArticle

5 Scopus citations

Determination of an interaction network between an extracellular bacterial pathogen and the human host

Griesenauer, B., Tran, T. M., Fortney, K. R., Janowicz, D. M., Johnson, P., Gao, H., Barnes, S., Wilson, L. S., Liu, Y. & Spinola, S. M., May 1 2019, In : mBio. 10, 3, e01193-19.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations

Diagnosis and clinical outcomes of extrapulmonary tuberculosis in antiretroviral therapy programmes in low- and middle-income countries: a multicohort study

the International Epidemiology Databases to Evaluate AIDS (IeDEA) consortium, Sep 1 2019, In : Journal of the International AIDS Society. 22, 9, e25392.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations
82 Scopus citations
3 Scopus citations

Emergence of neisseria gonorrhoeae strains harboring a novel combination of azithromycin-attenuating mutations

the SURRG Working Group, Apr 2019, In : Antimicrobial Agents and Chemotherapy. 63, 4, e02313-18.

Research output: Contribution to journalArticle

Endothelial colony-forming cell function is reduced during HIV infection

Gupta, S. K., Liu, Z., Sims, E. C., Repass, M. J., Haneline, L. S. & Yoder, M. C., Jan 1 2019, In : Journal of Infectious Diseases. 219, 7, p. 1076-1083 8 p.

Research output: Contribution to journalArticle

1 Scopus citations

Evidence for cross-protection but not type-replacement over the 11 years after human papillomavirus vaccine introduction

Covert, C., Ding, L., Brown, D., Franco, E. L., Bernstein, D. I. & Kahn, J. A., Aug 3 2019, In : Human Vaccines and Immunotherapeutics. 15, 7-8, p. 1962-1969 8 p.

Research output: Contribution to journalArticle

7 Scopus citations

GCH1 haplotypes and cardiovascular risk in HIV

Slaven, J. E., Haas, D. W., Liu, Z., Stein, J. H., Brown, T. T. & Gupta, S. K., Aug 1 2019, In : AIDS. 33, 10, p. 1669-1671 3 p.

Research output: Contribution to journalArticle

HIV-Nef protein transfer to endothelial cells requires Rac1 activation and leads to endothelial dysfunction: Implications for statin treatment in HIV patients

Chelvanambi, S., Gupta, S. K., Chen, X., Ellis, B. W., Maier, B. F., Colbert, T. M., Kuriakose, J., Zorlutuna, P., Jolicoeur, P., Obukhov, A. G. & Clauss, M., Oct 11 2019, In : Circulation research. 125, 9, p. 805-820 16 p.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations

Human papillomavirus vaccine effectiveness and herd protection in young women

Spinner, C., Ding, L., Bernstein, D. I., Brown, D. R., Franco, E. L., Covert, C. & Kahn, J. A., Feb 2019, In : Pediatrics. 143, 2, e20181902.

Research output: Contribution to journalArticle

10 Scopus citations

Impact of Tenofovir-Based Pre-exposure Prophylaxis on Biomarkers of Bone Formation, Bone Resorption, and Bone Mineral Metabolism in HIV-Negative Adults

Nickolas, T. L., Yin, M. T., Hong, T., Mugwanya, K. K., Branch, A. D., Heffron, R., Ramalho, J., Nandakumar, R., Dworakowski, E., Wanga, V., Mugo, N. R., Ronald, A., Celum, C., Donnell, D., Baeten, J. M., Wyatt, C. M., Coombs, R. W., Frenkel, L., Hendrix, C. W., Lingappa, J. R. & 14 others, McElrath, M. J., Fife, K. H., Were, E., Tumwesigye, E., Ndase, P., Katabira, E., Bukusi, E., Cohen, C. R., Wangisi, J., Campbell, J. D., Tappero, J. W., Kiarie, J., Farquhar, C. & John-Stewart, G., Sep 30 2019, In : Open Forum Infectious Diseases. 6, 10, ofz338.

Research output: Contribution to journalArticle

Open Access
Open Access
5 Scopus citations

Incidence of switching to second-line antiretroviral therapy and associated factors in children with HIV: an international cohort collaboration

The Collaborative Initiative for Paediatric HIV Education and Research (CIPHER) Global Cohort Collaboration, Feb 2019, In : The Lancet HIV. 6, 2, p. e105-e115

Research output: Contribution to journalArticle

4 Scopus citations

Insomnia as an Independent Predictor of Incident Cardiovascular Disease in HIV: Data from the Veterans Aging Cohort Study

Polanka, B. M., Kundu, S., So-Armah, K. A., Freiberg, M. S., Gupta, S. K., Bedimo, R. J., Budoff, M. J., Butt, A. A., Chang, C. C. H., Gottlieb, S. S., Marconi, V. C., Womack, J. A. & Stewart, J. C., May 1 2019, In : Journal of Acquired Immune Deficiency Syndromes. 81, 1, p. 110-117 8 p.

Research output: Contribution to journalArticle