Publications 1963 2019

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2019

Nuclei counting in microscopy images with three dimensional generative adversarial networks

Han, S., Lee, S., Fu, C., Salama, P., Dunn, K. & Delp, E. J., Jan 1 2019, Medical Imaging 2019: Image Processing. Landman, B. A., Angelini, E. D., Angelini, E. D. & Angelini, E. D. (eds.). SPIE, 109492Y. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10949).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Three-Dimensional Imaging
Fluorescence microscopy
Fluorescence Microscopy
Microscopy
Microscopic examination
2018

Biodynamic 4D imaging of living cancer biopsies for personalized selection of chemotherapy

Nolte, D. D., Li, Z., Choi, H., Turek, J. & Jalal, S., Jan 1 2018, Clinical and Translational Biophotonics, TRANSLATIONAL 2018. OSA - The Optical Society, Vol. Part F91-TRANSLATIONAL 2018.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Chemotherapy
Biopsy
Holography
Imaging techniques

Intracellular doppler imaging clinical trials in personalized cancer care

Nolte, D. D., Li, Z., Choi, H., Childress, M., Turek, J. & Jalal, S., Jan 1 2018, CLEO: Applications and Technology, CLEO_AT 2018. OSA - The Optical Society, Vol. Part F92-CLEO_AT 2018.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Clinical laboratories
Chemotherapy
Biopsy
Holography
Medical imaging

Method for Detection and Quantification of Non-Invasive Skin Sympathetic Nerve Activity

Liu, C., Wong, J., Doytchinova, A., Chen, P-S. & Lin, S-F., Nov 1 2018, 2018 International Conference on System Science and Engineering, ICSSE 2018. Institute of Electrical and Electronics Engineers Inc., 8520024

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Nerve
Quantification
Skin
Cardiac Arrhythmias
Signal processing
1 Citation (Scopus)

Nuclei detection and segmentation of fluorescence microscopy images using three dimensional convolutional neural networks

Ho, D. J., Fu, C., Salama, P., Dunn, K. & Delp, E. J., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, Vol. 2018-April. p. 418-422 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Three-Dimensional Imaging
Fluorescence microscopy
Fluorescence Microscopy
Neural networks
Microscopy

Three dimensional fluorescence microscopy image synthesis and segmentation

Fu, C., Lee, S., Ho, D. J., Han, S., Salama, P., Dunn, K. & Delp, E. J., Dec 13 2018, Proceedings - 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops, CVPRW 2018. IEEE Computer Society, Vol. 2018-June. p. 2302-2310 9 p. 8575470

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fluorescence microscopy
Image quality
Microscopic examination
Tissue
Deep learning
2017
1 Citation (Scopus)

An integrated surveillance system to examine testing, services, and outcomes for sexually transmitted diseases

Dixon, B., Tao, G., Wang, J., Tu, W., Hoover, S., Zhang, Z., Batteiger, T. & Arno, J., Jan 1 2017, MEDINFO 2017: Precision Healthcare through Informatics - Proceedings of the 16th World Congress on Medical and Health Informatics. IOS Press, p. 361-365 5 p. (Studies in Health Technology and Informatics; vol. 245).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Sexually Transmitted Diseases
Registries
Testing
Health
Environment and Public Health
2 Citations (Scopus)

Boundary segmentation for fluorescence microscopy using steerable filters

Ho, D. J., Salama, P., Dunn, K. & Delp, E. J., 2017, Medical Imaging 2017: Image Processing. SPIE, Vol. 10133. 101330E

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fluorescence microscopy
Fluorescence Microscopy
microscopy
filters
fluorescence

Comparison of two electronic order forms for medical consultation: Think-aloud usability assessment with referring clinicians

Savoy, A., Patel, H., Flanagan, M. E., Daggy, J., Barker, B. C., Slaven, J. E., Porter, B. W., Russ, A. L. & Weiner, M., Jan 1 2017, Proceedings of the Human Factors and Ergonomics Society 2017 International Annual Meeting, HFES 2017. Human Factors an Ergonomics Society Inc., Vol. 2017-October. p. 2025-2026 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

electronics
6 Citations (Scopus)

Nuclei segmentation of fluorescence microscopy images using convolutional neural networks

Fu, C., Ho, D. J., Han, S., Salama, P., Dunn, K. & Delp, E. J., Jun 15 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE Computer Society, p. 704-708 5 p. 7950617

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fluorescence microscopy
Fluorescence Microscopy
Cytology
Tissue
Neural networks
4 Citations (Scopus)

Nuclei Segmentation of Fluorescence Microscopy Images Using Three Dimensional Convolutional Neural Networks

Ho, D. J., Fu, C., Salama, P., Dunn, K. & Delp, E. J., Aug 22 2017, Proceedings - 30th IEEE Conference on Computer Vision and Pattern Recognition Workshops, CVPRW 2017. IEEE Computer Society, Vol. 2017-July. p. 834-842 9 p. 8014850

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fluorescence microscopy
Tissue
Neural networks
Microscopic examination
Photons
1 Citation (Scopus)

Pattern Discovery from Directional High-Order Drug-Drug Interaction Relations

Ning, X., Schleyer, T., Shen, L. & Li, L., Sep 8 2017, Proceedings - 2017 IEEE International Conference on Healthcare Informatics, ICHI 2017. Institute of Electrical and Electronics Engineers Inc., p. 154-162 9 p. 8031143

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Drug Interactions
Pharmaceutical Preparations
Drug-Related Side Effects and Adverse Reactions
Public Health
Research
5 Citations (Scopus)

Segmentation of fluorescence microscopy images using three dimensional active contours with inhomogeneity correction

Lee, S., Salama, P., Dunn, K. & Delp, E. J., Jun 15 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE Computer Society, p. 709-713 5 p. 7950618

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Three-Dimensional Imaging
Fluorescence microscopy
Fluorescence Microscopy
Image segmentation
Chemical analysis
2016
2 Citations (Scopus)

Clinicians as secondary users of patient-centered mobile technology in complex healthcare settings

Tunnell, H. D., Faiola, A. J., Haggstrom, D. & Srinivas, P., Apr 15 2016, 2015 17th International Conference on E-Health Networking, Application and Services, HealthCom 2015. Institute of Electrical and Electronics Engineers Inc., p. 657-660 4 p. 7454586

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Smartphones
Health
Technology
Delivery of Health Care
Mobile Applications

Four Dimensional Image Registration for Intravital Microscopy

Fu, C., Gadgil, N., Tahboub, K. K., Salama, P., Dunn, K. & Delp, E. J., Dec 16 2016, Proceedings - 29th IEEE Conference on Computer Vision and Pattern Recognition Workshops, CVPRW 2016. IEEE Computer Society, p. 1390-1398 9 p. 7789665

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Image registration
Tissue
Fluorescence microscopy
Splines
Animals
3 Citations (Scopus)

Jelly filling segmentation of fluorescence microscopy images containing incomplete labeling

Gadgil, N. J., Salama, P., Dunn, K. & Delp, E. J., Jun 15 2016, 2016 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2016 - Proceedings. IEEE Computer Society, Vol. 2016-June. p. 531-535 5 p. 7493324

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fluorescence microscopy
Fluorescence Microscopy
Labeling
Rats
Luminance
9 Citations (Scopus)

Nuclei segmentation of fluorescence microscopy images based on midpoint analysis and marked point process

Gadgil, N. J., Salama, P., Dunn, K. & Delp, E. J., Apr 25 2016, 2016 IEEE Southwest Symposium on Image Analysis and Interpretation, SSIAI 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-April. p. 37-40 4 p. 7459169

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fluorescence microscopy
Image analysis
Luminance
Microscopes
Tissue
1 Citation (Scopus)

Supporting information management in ICU rounding a novel mobile system for managing patient-centered notes and action-items

Srinivas, P., Faiola, A. J. & Khan, B., Apr 15 2016, 2015 17th International Conference on E-Health Networking, Application and Services, HealthCom 2015. Institute of Electrical and Electronics Engineers Inc., p. 590-593 4 p. 7454571

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Intensive care units
Information Management
information management
Information management
Intensive Care Units
2015
5 Citations (Scopus)

Boundary fitting based segmentation of fluorescence microscopy images

Lee, S., Salama, P., Dunn, K. & Delp, E. J., 2015, Proceedings of SPIE - The International Society for Optical Engineering. SPIE, Vol. 9408. 940805

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fluorescence Microscopy
Fluorescence microscopy
Microscopic examination
Segmentation
microscopy
3 Citations (Scopus)

Building Comprehensive and Sustainable Health Informatics Institutions in Developing Countries: Moi University Experience

Were, M. C., Siika, A., Ayuo, P. O., Atwoli, L. & Esamai, F., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 216. p. 520-524 5 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Informatics
Developing countries
Developing Countries
Health
Capacity Building

Detecting anomalous care pathways in long-term care network

Keno, H., Kong, N., Landry, S., Tu, W. & Callahan, C., 2015, IIE Annual Conference and Expo 2015. Institute of Industrial Engineers, p. 218-224 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Costs

Employing decision-centered design to develop decision support for colorectal cancer screening (extended abstract)

Militello, L., Borders, M., Sushereba, C., Diiulio, J., Doebbeling, B., Imperiale, T. & Saleem, J., 2015, 2015 International Annual Meeting of the Human Factors and Ergonomics Society, HFES 2015. Human Factors an Ergonomics Society Inc., Vol. 2015-January. p. 486-487 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Screening
cancer
Health
workflow
Personnel rating
1 Citation (Scopus)

Evaluating lean implementation: Challenges in developing a research agenda for lean enterprise transformation in healthcare

Miech, E., Bravata, D. & Woodward-Hagg, H., 2015, IIE Annual Conference and Expo 2015. Institute of Industrial Engineers, p. 2172-2180 9 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Industry
Industrial engineering
5 Citations (Scopus)

Identification of Patients with Family History of Pancreatic Cancer-Investigation of an NLP System Portability

Mehrabi, S., Krishnan, A., Roch, A. M., Schmidt, H., Li, D., Kesterson, J., Beesley, C., Dexter, P., Schmidt, C., Palakal, M. & Liu, H., 2015, Studies in Health Technology and Informatics. IOS Press, Vol. 216. p. 604-608 5 p. (Studies in Health Technology and Informatics; vol. 216).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Natural language processing systems
Natural Language Processing
Pancreatic Neoplasms
Information Management
Information Storage and Retrieval
1 Citation (Scopus)

Segmentation of vascular structures and hematopoietic cells in 3D microscopy images and quantitative analysis

Mu, J., Yang, L., Kamocka, M., Zollman, A. L., Carlesso, N. & Chen, D. Z., 2015, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE, Vol. 9413. 941305

Research output: Chapter in Book/Report/Conference proceedingConference contribution

image analysis
Image analysis
quantitative analysis
Blood Vessels
Microscopy
2014

Challenges when engaging diabetic patients and their clinicians in using e-health technologies to improve clinical outcomes

Dixon, B., Jabour, A. M., O'Kelly Phillips, E. & Marrero, D., 2014, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). PART 3 ed. Springer Verlag, Vol. 8515 LNCS. p. 238-247 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8515 LNCS, no. PART 3).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Diabetes Mellitus
Medical problems
Health
Chronic Disease
Electronics

MiR-210: Fine-tuning the hypoxic response

Ivan, M. & Huang, X., 2014, Advances in Experimental Medicine and Biology. Vol. 772. p. 205-227 23 p. (Advances in Experimental Medicine and Biology; vol. 772).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Tumors
Tuning
MicroRNAs
Cells
Tissue
43 Citations (Scopus)

MiR-210: Fine-tuning the hypoxic response

Ivan, M. & Huang, X., 2014, Advances in Experimental Medicine and Biology. Springer New York LLC, Vol. 772. p. 205-227 23 p. (Advances in Experimental Medicine and Biology; vol. 772).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Tumors
Tuning
MicroRNAs
Cells
Tissue
2013
7 Citations (Scopus)

An efficient pancreatic cyst identification methodology using natural language processing

Mehrabi, S., Schmidt, C., Waters, J. A., Beesley, C., Krishnan, A., Kesterson, J., Dexter, P., Al-Haddad, M. A., Tierney, W. M. & Palakal, M., 2013, Studies in Health Technology and Informatics. 1-2 ed. Vol. 192. p. 822-826 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Natural Language Processing
Pancreatic Cyst
Natural language processing systems
Processing
Pancreatic Neoplasms
3 Citations (Scopus)

Effect of EMR implementation on clinic time, patient and staff satisfaction, and chart completeness in a resource-limited antenatal clinic in Kenya

Gray, A., Henshaw, C., Wright, J., Leah, J., Caloia, D., Spitzer, R. F., Omenge, E., Chemwolo, B. & Tierney, W. M., 2013, Studies in Health Technology and Informatics. 1-2 ed. Vol. 192. p. 1222 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electronic medical equipment
Electronic Health Records
Kenya
Patient Satisfaction
Delivery of Health Care
2 Citations (Scopus)

Efficiency strategies for facilitating computerized clinical documentation in ambulatory care

Saleem, J. J., Adams, S., Frankel, R., Doebbeling, B. N. & Patterson, E. S., 2013, Studies in Health Technology and Informatics. 1-2 ed. Vol. 192. p. 13-17 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electronic Health Records
Ambulatory Care
Documentation
Health
Efficiency
2 Citations (Scopus)

Experience implementing electronic health records in the antenatal clinic of a teaching and referral hospital in Kenya

Chemwolo, B., Caloia, D., Wools-Kaloustian, K., Sidle, J., Spitzer, R. F., Were, M., Bell, A. & Tierney, W. M., 2013, Studies in Health Technology and Informatics. 1-2 ed. Vol. 192. p. 1126 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electronic Health Records
Kenya
Teaching Hospitals
Teaching
Referral and Consultation

Improving medication adherence for chronic disease using integrated e-Technologies

Dixon, B., Jabour, A. M., Phillips, E. O. K. & Marrero, D., 2013, Studies in Health Technology and Informatics. 1-2 ed. Vol. 192. p. 929 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Medication Adherence
Medical problems
Chronic Disease
Technology
Diabetes Mellitus

Representing intracoronal tooth restorations in the ontology for oral health and disease

Duncan, W., Schleyer, T. & Ruttenberg, A., 2013, CEUR Workshop Proceedings. CEUR-WS, Vol. 1060. p. 109-112 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Restoration
Ontology
Health
11 Citations (Scopus)

Three dimensional segmentation of fluorescence microscopy images using active surfaces

Lorenz, K. S., Salama, P., Dunn, K. & Delp, E. J., 2013, 2013 IEEE International Conference on Image Processing, ICIP 2013 - Proceedings. p. 1153-1157 5 p. 6738238

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fluorescence microscopy
Tissue
Optical microscopy
Rats
Microscopic examination
4 Citations (Scopus)

Treating acute myeloid leukemia via HSC transplantation: A preliminary study of multi-objective personalization strategies

Chakrabarty, A., Pearce, S. M., Nelson, R. & Rundell, A. E., 2013, 2013 American Control Conference, ACC 2013. p. 3790-3795 6 p. 6580417

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Stem cells
Controllers
Chemotherapy
Model predictive control
Ordinary differential equations
4 Citations (Scopus)

Usability of implementing a tablet-based decision support and integrated record-keeping (DESIRE) tool in the nurse management of hypertension in rural Kenya

Blank, E., Tuikong, N., Misoi, L., Kamano, J., Hutchinson, C., Kimaiyo, S., Fustera, V., Were, M. & Vedanthan, R., 2013, Studies in Health Technology and Informatics. 1-2 ed. Vol. 192. p. 1002 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Kenya
Tablets
Nurses
Hypertension
Cardiovascular Diseases
2012
4 Citations (Scopus)

A multi-resolution approach to non-rigid registration of microscopy images

Lorenz, K. S., Salama, P., Dunn, K. & Delp, E. J., 2012, Proceedings - International Symposium on Biomedical Imaging. p. 198-201 4 p. 6235518

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Image registration
Artifacts
Microscopy
Microscopic examination
Lung
19 Citations (Scopus)

Design of a phone-based clinical decision support system for resource-limited settings

Anokwa, Y., Ribeka, N., Parikh, T., Borriello, G. & Were, M. C., 2012, ACM International Conference Proceeding Series. p. 13-24 12 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Decision support systems
Failure modes
Health care
3 Citations (Scopus)

Micro-aperture chip system for high-throughput immunomagnetic cell detection

Chang, C. L., Savran, C. A., Jalal, S. & Matei, D., 2012, Proceedings of IEEE Sensors. 6411336

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Cells
Flow rate
Throughput
Magnetic fields
Parallel flow
2 Citations (Scopus)

Modelling irregular samples for analyzing the risk of complications of diabetes mellitus

Kim, D. S. & Walsh, J. P., 2012, Proceedings of the 6th International Conference on Ubiquitous Information Management and Communication, ICUIMC'12. 37

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Medical problems
Glucose
Blood

Optical mapping of the effect of pacing rate and I kr blocker, Dofetilide, on heterogeneity of action potential duration between rabbit right and left ventricle

Yang, L., Li, L., Sun, H. M., Kong, S., Yang, Z., Zhang, H. & Lin, S-F., 2012, Proceedings - 2012 International Conference on Biomedical Engineering and Biotechnology, iCBEB 2012. p. 393-395 3 p. 6245137

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Action Potentials
Heart Ventricles
Rabbits
Depolarization
pamidronate
1 Citation (Scopus)

Reading engagement offsets declines in processing capacity for health literacy

Yamani, Y., Chin, J., Meyers, E. A. G., Gao, X., Morrow, D. G., Stine-Morrow, E. A. L., Conner-Garcia, T., Graumlich, J. F. & Murray, M., 2012, Proceedings of the Human Factors and Ergonomics Society. p. 916-920 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

literacy
Health
Processing
health
cognitive ability

Wireless measurement of Sympathetic Nervous activity using planar nanoelectrode arrays

Mahmood, A., Chen, P-S. & Akingba, A. G., 2012, Proceedings of IEEE Sensors. 6411485

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Signal to noise ratio
Wire
Electrodes
Secondary batteries
Sensors
2011
1 Citation (Scopus)

Nanoelectrode arrays for measuring Sympathetic Nervous Activity

Mahmood, A., Chen, P-S. & George Akingba, A., 2011, Proceedings of IEEE Sensors. p. 1241-1244 4 p. 6127022

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electrodes
Signal to noise ratio
Wire
Neurology
Animals
1 Citation (Scopus)

Non-rigid registration of multiphoton microscopy images using B-splines

Lorenz, K. S., Salama, P., Dunn, K. & Delp, E. J., 2011, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. Vol. 7962. 796221

Research output: Chapter in Book/Report/Conference proceedingConference contribution

splines
Splines
Microscopy
Microscopic examination
microscopy
2 Citations (Scopus)

Potential of gallium-based leads for cardiac rhythm management devices

Kyle, A. M., Leahy-Glass, N., Combs, W. & March, K. L., 2011, Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS. p. 341-344 4 p. 6090113

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Cardiac rhythm management
Gallium
Equipment and Supplies
Pacemakers
Liquids

Selective sinoatrial node optical mapping to investigate the mechanism of sinus rate acceleration

Lin, S-F., Shinohara, T., Joung, B. & Chen, P-S., 2011, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. Vol. 7883. 78832Z

Research output: Chapter in Book/Report/Conference proceedingConference contribution

sinuses
Sinoatrial Node
clocks
Clocks
Pacemakers
1 Citation (Scopus)

The effects of domain general and health knowledge in processing general and health texts among older adults with hypertension

Chin, J., Stine-Morrow, E. A. L., Morrow, D., Gao, X., Conner-Garcia, T., Graumlich, J. F. & Murray, M., 2011, Proceedings of the Human Factors and Ergonomics Society. p. 147-151 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

hypertension
Health
Processing
health
comprehension
2010
1 Citation (Scopus)

A novel tool to track and analyze qualitative usability data: Lessons learned from the VA's personal health record

Russell, S. A., Saleem, J. J., Haggstrom, D., Russ, A. L. & Chumbler, N. R., 2010, Proceedings of the Human Factors and Ergonomics Society. Vol. 2. p. 1264-1268 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Health
health
Testing
Bins
video