Publications

Conference contribution

Boundary segmentation for fluorescence microscopy using steerable filters

Ho, D. J., Salama, P., Dunn, K. W. & Delp, E. J., Jan 1 2017, Medical Imaging 2017: Image Processing. Angelini, E. D., Styner, M. A. & Angelini, E. D. (eds.). SPIE, 101330E. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10133).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Cellular mechanisms involved in mechanotransduction

Duncan, R., Brubaker, K., Chen, N., Ajubi, N., Ryder, K. & Pavalko, F., Dec 1 1999, Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings. IEEE, 1 p. (Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings; vol. 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Center-extraction-based three dimensional nuclei instance segmentation of fluorescence microscopy images

Ho, D. J., Han, S., Fu, C., Salama, P., Dunn, K. W. & Delp, E. J., May 2019, 2019 IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2019 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 8834516. (2019 IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2019 - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Combined experimental and simulation study of blood clot formation

Xu, Z., Lioi, J., Alber, M., Mu, J., Liu, X., Chen, D. Z., Kamocka, M. M. & Rosen, E. D., Dec 1 2009, TIC-STH'09: 2009 IEEE Toronto International Conference - Science and Technology for Humanity. p. 357-362 6 p. 5444476. (TIC-STH'09: 2009 IEEE Toronto International Conference - Science and Technology for Humanity).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

8 Scopus citations

Four Dimensional Image Registration for Intravital Microscopy

Fu, C., Gadgil, N., Tahboub, K. K., Salama, P., Dunn, K. & Delp, E. J., Dec 16 2016, Proceedings - 29th IEEE Conference on Computer Vision and Pattern Recognition Workshops, CVPRW 2016. IEEE Computer Society, p. 1390-1398 9 p. 7789665

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Jelly filling segmentation of fluorescence microscopy images containing incomplete labeling

Gadgil, N. J., Salama, P., Dunn, K. W. & Delp, E. J., Jun 15 2016, 2016 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2016 - Proceedings. IEEE Computer Society, p. 531-535 5 p. 7493324. (Proceedings - International Symposium on Biomedical Imaging; vol. 2016-June).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Non-rigid registration of multiphoton microscopy images using B-splines

Lorenz, K. S., Salama, P., Dunn, K. W. & Delp, E. J., Jun 9 2011, Medical Imaging 2011: Image Processing. 796221. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7962).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Nuclei counting in microscopy images with three dimensional generative adversarial networks

Han, S., Lee, S., Fu, C., Salama, P., Dunn, K. W. & Delp, E. J., Jan 1 2019, Medical Imaging 2019: Image Processing. Angelini, E. D., Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, 109492Y. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10949).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Nuclei detection and segmentation of fluorescence microscopy images using three dimensional convolutional neural networks

Ho, D. J., Fu, C., Salama, P., Dunn, K. W. & Delp, E. J., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, p. 418-422 5 p. (Proceedings - International Symposium on Biomedical Imaging; vol. 2018-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Scopus citations

Nuclei segmentation of fluorescence microscopy images based on midpoint analysis and marked point process

Gadgil, N. J., Salama, P., Dunn, K. & Delp, E. J., Apr 25 2016, 2016 IEEE Southwest Symposium on Image Analysis and Interpretation, SSIAI 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-April. p. 37-40 4 p. 7459169

Research output: Chapter in Book/Report/Conference proceedingConference contribution

10 Scopus citations

Nuclei segmentation of fluorescence microscopy images using convolutional neural networks

Fu, C., Ho, D. J., Han, S., Salama, P., Dunn, K. & Delp, E. J., Jun 15 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE Computer Society, p. 704-708 5 p. 7950617

Research output: Chapter in Book/Report/Conference proceedingConference contribution

11 Scopus citations

Nuclei Segmentation of Fluorescence Microscopy Images Using Three Dimensional Convolutional Neural Networks

Ho, D. J., Fu, C., Salama, P., Dunn, K. & Delp, E. J., Aug 22 2017, Proceedings - 30th IEEE Conference on Computer Vision and Pattern Recognition Workshops, CVPRW 2017. IEEE Computer Society, Vol. 2017-July. p. 834-842 9 p. 8014850

Research output: Chapter in Book/Report/Conference proceedingConference contribution

9 Scopus citations

Segmentation, reconstruction, and analysis of blood thrombi in 2-photon microscopy images

Mu, J., Liu, X., Kamocka, M. M., Xu, Z., Alber, M. S., Rosen, E. D. & Chen, D. Z., Nov 23 2009, 2009 22nd IEEE International Symposium on Computer-Based Medical Systems, CBMS 2009. 5255347. (Proceedings - IEEE Symposium on Computer-Based Medical Systems).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations

Segmentation of fluorescence microscopy images using three dimensional active contours with inhomogeneity correction

Lee, S., Salama, P., Dunn, K. W. & Delp, E. J., Jun 15 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE Computer Society, p. 709-713 5 p. 7950618. (Proceedings - International Symposium on Biomedical Imaging).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Scopus citations

Segmentation of vascular structures and hematopoietic cells in 3D microscopy images and quantitative analysis

Mu, J., Yang, L., Kamocka, M., Zollman, A. L., Carlesso, N. & Chen, D. Z., 2015, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE, Vol. 9413. 941305

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Three dimensional blind image deconvolution for fluorescence microscopy using generative adversarial networks

Lee, S., Han, S., Salama, P., Dunn, K. W. & Delp, E. J., Apr 2019, ISBI 2019 - 2019 IEEE International Symposium on Biomedical Imaging. IEEE Computer Society, p. 538-542 5 p. 8759250. (Proceedings - International Symposium on Biomedical Imaging; vol. 2019-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Three dimensional fluorescence microscopy image synthesis and segmentation

Fu, C., Lee, S., Ho, D. J., Han, S., Salama, P., Dunn, K. & Delp, E. J., Dec 13 2018, Proceedings - 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops, CVPRW 2018. IEEE Computer Society, Vol. 2018-June. p. 2302-2310 9 p. 8575470

Research output: Chapter in Book/Report/Conference proceedingConference contribution

11 Scopus citations

Three dimensional segmentation of fluorescence microscopy images using active surfaces

Lorenz, K. S., Salama, P., Dunn, K. W. & Delp, E. J., Dec 1 2013, 2013 IEEE International Conference on Image Processing, ICIP 2013 - Proceedings. p. 1153-1157 5 p. 6738238. (2013 IEEE International Conference on Image Processing, ICIP 2013 - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

12 Scopus citations
Conference article

Image guided interactive volume visualization for confocal microscopy data exploration

Biddlecome, T., Fang, S., Dunn, K. & Tuceryan, M., Dec 1 1998, In : Proceedings of SPIE - The International Society for Optical Engineering. 3335, p. 130-140 11 p.

Research output: Contribution to journalConference article

5 Scopus citations
4 Scopus citations
Comment/debate

Aldosterone: Yet Another Path to Blood Pressure Variability and Target Organ Damage

Decker, B. S. & Pratt, H. J., Aug 1 2015, In : Journal of Clinical Hypertension. 17, 8, p. 609-610 2 p.

Research output: Contribution to journalComment/debate

1 Scopus citations

Are vitamin D receptor agonists like angiotensin-converting enzyme inhibitors without side effects

Agarwal, R., Jun 1 2012, In : Kidney international. 77, 11, p. 943-945 3 p.

Research output: Contribution to journalComment/debate

15 Scopus citations

ASN policy on managing conflicts of interest

Stokes, J. B., Haupt, A., Molitoris, B. A., Kokemueller, P. & Ibrahim, T., Sep 1 2009, In : Journal of the American Society of Nephrology. 20, 9, p. 1853-1859 7 p.

Research output: Contribution to journalComment/debate

1 Scopus citations

Blood pressure is blood pressure is blood pressure: Or is it?

Agarwal, R., Mar 1 2017, In : Journal of Clinical Hypertension. 19, 3, p. 303-304 2 p.

Research output: Contribution to journalComment/debate

Calcium builds strong bones, and more is better-correct? Well, maybe not

Jamal, S. A. & Moe, S. M., Nov 7 2012, In : Clinical Journal of the American Society of Nephrology. 7, 11, p. 1877-1883 7 p.

Research output: Contribution to journalComment/debate

8 Scopus citations

Caring for individuals with hypertension in CKD, especially those with low education

Agarwal, R., Oct 2019, In : Kidney international. 96, 4, p. 820-822 3 p.

Research output: Contribution to journalComment/debate

Cinacalcet hydrochloride: A viewpoint by Sharon M. Moe

Moe, S. M., Jan 1 2005, In : Drugs. 65, 2, 1 p.

Research output: Contribution to journalComment/debate

Comment: Vancomycin and tobramycin continuous hemofiltration clearance methodologies

Mueller, B. A., Clark, W. R., Kraus, M. A., Macias, W. L. & Armstrong, D. K., Jan 1 1993, In : Annals of Pharmacotherapy. 27, 10, p. 1285-1286 2 p.

Research output: Contribution to journalComment/debate

10 Scopus citations

Correction: RhoB-dependent modulation of early endocytic traffic in Madin-Darby canine kidney cells (Journal of Biological Chemistry (2004))

Rojas, R., Ruiz, W. G., Wang, E., Kinlough, C. L., Poland, P. A., Hughey, R. P., Dunn, K. W. & Apodaca, G., Aug 7 2015, In : Journal of Biological Chemistry. 290, 32, 1 p.

Research output: Contribution to journalComment/debate

1 Scopus citations

Early enterococcus-associated acute postinfectious glomerulonephritis after kidney transplant

Tandon, T., Mujtaba, M., Mishler, D., Phillips, C. & Sharfuddin, A., Aug 2014, In : Clinical Kidney Journal. 7, 4, p. 426-427 2 p.

Research output: Contribution to journalComment/debate

1 Scopus citations

Epidemiology of chronic kidney disease among normotensives: But what is chronic kidney disease?

Agarwal, R., May 1 2010, In : Hypertension. 55, 5, p. 1097-1099 3 p.

Research output: Contribution to journalComment/debate

6 Scopus citations

Erratum: Systolic Hypertension in Hemodialysis Patients (Seminars in Dialysis (2003) 16 (208-213))

Agarwal, R., Jul 1 2003, In : Seminars in Dialysis. 16, 4, 1 p.

Research output: Contribution to journalComment/debate

Erratum

Molitoris, B. A. & Simon, F. R., Oct 1 1986, In : The Journal of Membrane Biology. 94, 3, 1 p.

Research output: Contribution to journalComment/debate

Erratum: A multiscale model of venous thrombus formation with surface-mediated control of blood coagulation cascade (Biophysical Journal (2010) 98 (1723-1732))

Xu, Z., Lioi, J., Mu, J., Kamocka, M. M., Liu, X., Chen, D. Z., Rosen, E. D. & Alber, M., Oct 6 2010, In : Biophysical Journal. 99, 7, p. 2384-2385 2 p.

Research output: Contribution to journalComment/debate

1 Scopus citations

Erratum: Renal cysts of inv/inv mice resemble early infantile nephronophthisis (Journal of the American Society of Nephrology (July 2004) 15 (1744-1755))

Phillips, C. L., Miller, K. J., Filson, A. J., Nürnberger, J., Clendenon, J. L., Cook, G. W., Dunn, K. W., Overbeek, P. A., Cabello, O. A., Gattone, V. H. & Bacallao, R. L., Dec 1 2004, In : Journal of the American Society of Nephrology. 15, 12, p. i

Research output: Contribution to journalComment/debate

Erratum to: Diet and Diabetic Kidney Disease: Plant Versus Animal Protein (Current Diabetes Reports, (2017), 17, 3, (15), 10.1007/s11892-017-0843-x)

Moorthi, R. N., Vorland, C. J. & Hill Gallant, K. M., Apr 1 2017, In : Current Diabetes Reports. 17, 4, 27.

Research output: Contribution to journalComment/debate

Fueling the fire in acute kidney injury: Endothelial cells collect their Toll

Sutton, T. A. & Dagher, P. C., Feb 2011, In : Kidney international. 79, 3, p. 267-269 3 p.

Research output: Contribution to journalComment/debate

3 Scopus citations

Hypertension, hypokalemia, and thiazide-induced diabetes a 3-way connection

Agarwal, R., Dec 1 2008, In : Hypertension. 52, 6, p. 1012-1013 2 p.

Research output: Contribution to journalComment/debate

12 Scopus citations

Improving outcomes from acute kidney injury: Report of an initiative

Bagga, A., Bakkaloglu, A., Devarajan, P., Mehta, R. L., Kellum, J. A., Shah, S. V., Molitoris, B. A., Ronco, C., Warnock, D. G., Joannidis, M. & Levin, A., Oct 1 2007, In : Pediatric Nephrology. 22, 10, p. 1655-1658 4 p.

Research output: Contribution to journalComment/debate

42 Scopus citations

Intensity of renal support in critically ill patients with acute kidney injury (New England Journal of Medicine (2008) 359, (7-20))

Palevsky, P. M., Zhang, J. H., O'Connor, T. Z., Chertow, G. M., Crowley, S. T., Choudhury, D., Finkel, K., Kellum, J. A., Paganini, E., Schein, R. M. H., Smith, M. W., Swanson, K. M., Thompson, B. T., Vijayan, A., Watnick, S., Star, R. A., Peduzzi, P., Young, E., Fissel, R., Fissel, W. & 192 others, Patel, U., Belanger, K., Raine, A., Ricci, N., Lohr, J., Arora, P., Cloen, D., Wassel, D., Yohe, L., Amanzadeh, J., Penfield, J., Hussain, M., Katneni, R., Sajgure, A., Swann, A., Dolson, G., Ramanathan, V., Tasby, G., Bacallao, R., Jaradat, M., Graves, K., Li, Q., Krause, M., Shaver, M., Alam, M., Morris, K., Bland, T., Satter, E., Kraut, J., Felsenfeld, A., Levine, B., Nagami, G., Vaghaiwalla, B., Duffney, J., Moore, J., Cely, C., Jaimes, E., Kett, D., Quartin, A., Arcia, M., Barchi-Chung, A., Batuman, V., Alper, A., Dreisbach, A., Simon, E., Kulivan, C., Aslam, N., Ramkumar, M., Grum, E., Rogers, P., Weisbord, S., Geffel, C., Wahba, I., Kelly, D., Walczyk, J., Feldman, G., Mogyorosi, A., Viol, G., Halverson, M., Schmid, S., Totten, H., Gabbai, F., Mullaney, S., Smith, R., Dingsdale, J., Woods, S., Johansen, K., Lovett, D., O'Hare, A., McCarthy, J., Rosado-Rodriguez, C., Galera, A., Rodriguez-Vega, G., Rodriguez, W., Vilchez, C., Young, B., Andress, D., Lindner, A., Galvin, G., Gourley, N., Peixoto, A., Perkal, M., Joncas, C., Demirjian, S., Yared, J., Brienza, R., Garcia, M., Seifert, T., Sweeney, L., Rabb, H., Atta, M., Brower, R., Choi, M., Eustace, J., Scheel, P., Heck, E., Rahman, H., Niles, J., Bazari, H., Smirnakis, K., Steele, D., Thadhani, R., Laliberte, K., Leeman, B., McCarthy, C., Pescatore, M., Szerlip, H., Fall, P., Jagadeesan, M., Mulloy, L., Paulson, W., White, J., Sickafoose, N., Cho, K., Gropper, M., Liu, K., Matthay, M., Borovitz, K., Koenigsberg, M., Rodriguez, S., Contreras, G., Cohn, S., Diego, J., Kett, D., Quartin, A., Carvalho, C., Carvalho, D., Castro, M., de la Cuesta, C., Espinal, I., Hurtado, A., Oyuela, P., Aslam, N., Unruh, M., Burr, R., Donahoe, M., Marszalek, J., Shields, M., Venkataraman, R., Weisbord, S., Aubrecht, J., Sterling, H., Mandich, L., Shaw, A., Foringer, J., Samuels, J., Efron, B., Rocco, M., Deterding, E., Moossavi, S., Bethea, C., McBride, D., Warren, S., Kollef, M., Sambandam, K., Hammer, E., Hoffman, M., Stokes, J., Connors, A. F., Feldman, H., Greer, J., Koch, G. G., Stewart, T., Wittes, J., Overberger, P., Michler, S., Antonelli, M., Dellert, K., Durant, L., Franchini, R., Kossack, A., McBride, V., O'Neil, S., Roy, T., Russo, J., Vitale, J., Sather, M., Fye, C., Haakenson, C. M., Krueger, D. H., Thornton, J., Dalzell, C., Horney, R., Siroka, A., Su, P., Brophy, M., Humphries, D., Govan, D., O'Leary, T. J., Huang, G. D., Feussner, J. R. & Eggers, P., Dec 10 2009, In : New England Journal of Medicine. 361, 24, 1 p.

Research output: Contribution to journalComment/debate

1 Scopus citations

Management of anaemia in CKD-The relative importance of erythropoietin and iron

Agarwal, R., May 1 2011, In : NDT Plus. 4, SUPPL. 1, p. i1-i2

Research output: Contribution to journalComment/debate

1 Scopus citations

Measuring glomerular filtration rate in acute kidney injury: Yes, but not yet

Molitoris, B. A., Sep 24 2012, In : Critical Care. 16, 5, 158.

Research output: Contribution to journalComment/debate

7 Scopus citations

Measuring glomerular filtration rate in the intensive care unit: No substitutes please

Molitoris, B. A., Sep 4 2013, In : Critical Care. 17, 5, 181.

Research output: Contribution to journalComment/debate

19 Scopus citations

Modulation of apoptosis by ischemic preconditioning: An emerging role for miR-21

El-Achkar, T. M., Dec 1 2012, In : Kidney international. 82, 11, p. 1149-1151 3 p.

Research output: Contribution to journalComment/debate

6 Scopus citations
1 Scopus citations