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Conference contribution
2020

Three Dimensional Nuclei Segmentation and Classification of Fluorescence Microscopy Images

Han, S., Lee, S., Chen, A., Yang, C., Salama, P., Dunn, K. W. & Delp, E. J., Apr 2020, ISBI 2020 - 2020 IEEE International Symposium on Biomedical Imaging. IEEE Computer Society, p. 526-530 5 p. 9098560. (Proceedings - International Symposium on Biomedical Imaging; vol. 2020-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2019

Center-extraction-based three dimensional nuclei instance segmentation of fluorescence microscopy images

Ho, D. J., Han, S., Fu, C., Salama, P., Dunn, K. W. & Delp, E. J., May 2019, 2019 IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2019 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 8834516. (2019 IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2019 - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Nuclei counting in microscopy images with three dimensional generative adversarial networks

Han, S., Lee, S., Fu, C., Salama, P., Dunn, K. W. & Delp, E. J., Jan 1 2019, Medical Imaging 2019: Image Processing. Angelini, E. D., Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, 109492Y. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10949).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Three dimensional blind image deconvolution for fluorescence microscopy using generative adversarial networks

Lee, S., Han, S., Salama, P., Dunn, K. W. & Delp, E. J., Apr 2019, ISBI 2019 - 2019 IEEE International Symposium on Biomedical Imaging. IEEE Computer Society, p. 538-542 5 p. 8759250. (Proceedings - International Symposium on Biomedical Imaging; vol. 2019-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations
2018

Nuclei detection and segmentation of fluorescence microscopy images using three dimensional convolutional neural networks

Ho, D. J., Fu, C., Salama, P., Dunn, K. W. & Delp, E. J., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, p. 418-422 5 p. (Proceedings - International Symposium on Biomedical Imaging; vol. 2018-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Scopus citations

Three dimensional fluorescence microscopy image synthesis and segmentation

Fu, C., Lee, S., Ho, D. J., Han, S., Salama, P., Dunn, K. & Delp, E. J., Dec 13 2018, Proceedings - 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops, CVPRW 2018. IEEE Computer Society, Vol. 2018-June. p. 2302-2310 9 p. 8575470

Research output: Chapter in Book/Report/Conference proceedingConference contribution

12 Scopus citations
2017

Boundary segmentation for fluorescence microscopy using steerable filters

Ho, D. J., Salama, P., Dunn, K. W. & Delp, E. J., Jan 1 2017, Medical Imaging 2017: Image Processing. Angelini, E. D., Styner, M. A. & Angelini, E. D. (eds.). SPIE, 101330E. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10133).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Nuclei segmentation of fluorescence microscopy images using convolutional neural networks

Fu, C., Ho, D. J., Han, S., Salama, P., Dunn, K. & Delp, E. J., Jun 15 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE Computer Society, p. 704-708 5 p. 7950617

Research output: Chapter in Book/Report/Conference proceedingConference contribution

12 Scopus citations

Nuclei Segmentation of Fluorescence Microscopy Images Using Three Dimensional Convolutional Neural Networks

Ho, D. J., Fu, C., Salama, P., Dunn, K. & Delp, E. J., Aug 22 2017, Proceedings - 30th IEEE Conference on Computer Vision and Pattern Recognition Workshops, CVPRW 2017. IEEE Computer Society, Vol. 2017-July. p. 834-842 9 p. 8014850

Research output: Chapter in Book/Report/Conference proceedingConference contribution

10 Scopus citations

Segmentation of fluorescence microscopy images using three dimensional active contours with inhomogeneity correction

Lee, S., Salama, P., Dunn, K. W. & Delp, E. J., Jun 15 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE Computer Society, p. 709-713 5 p. 7950618. (Proceedings - International Symposium on Biomedical Imaging).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

8 Scopus citations
2016

Four Dimensional Image Registration for Intravital Microscopy

Fu, C., Gadgil, N., Tahboub, K. K., Salama, P., Dunn, K. & Delp, E. J., Dec 16 2016, Proceedings - 29th IEEE Conference on Computer Vision and Pattern Recognition Workshops, CVPRW 2016. IEEE Computer Society, p. 1390-1398 9 p. 7789665

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Jelly filling segmentation of fluorescence microscopy images containing incomplete labeling

Gadgil, N. J., Salama, P., Dunn, K. W. & Delp, E. J., Jun 15 2016, 2016 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2016 - Proceedings. IEEE Computer Society, p. 531-535 5 p. 7493324. (Proceedings - International Symposium on Biomedical Imaging; vol. 2016-June).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Nuclei segmentation of fluorescence microscopy images based on midpoint analysis and marked point process

Gadgil, N. J., Salama, P., Dunn, K. & Delp, E. J., Apr 25 2016, 2016 IEEE Southwest Symposium on Image Analysis and Interpretation, SSIAI 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-April. p. 37-40 4 p. 7459169

Research output: Chapter in Book/Report/Conference proceedingConference contribution

10 Scopus citations
2015

Boundary fitting based segmentation of fluorescence microscopy images

Lee, S., Salama, P., Dunn, K. W. & Delp, E. J., Jan 1 2015, Proceedings of SPIE-IS and T Electronic Imaging - Imaging and Multimedia Analytics in a Web and Mobile World 2015. Allebach, J. P., Fan, Z. & Lin, Q. (eds.). SPIE, 940805. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 9408).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Scopus citations

Segmentation of vascular structures and hematopoietic cells in 3D microscopy images and quantitative analysis

Mu, J., Yang, L., Kamocka, M., Zollman, A. L., Carlesso, N. & Chen, D. Z., 2015, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE, Vol. 9413. 941305

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations
2013

Three dimensional segmentation of fluorescence microscopy images using active surfaces

Lorenz, K. S., Salama, P., Dunn, K. W. & Delp, E. J., Dec 1 2013, 2013 IEEE International Conference on Image Processing, ICIP 2013 - Proceedings. p. 1153-1157 5 p. 6738238. (2013 IEEE International Conference on Image Processing, ICIP 2013 - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

12 Scopus citations
2012

A multi-resolution approach to non-rigid registration of microscopy images

Lorenz, K. S., Salama, P., Dunn, K. W. & Delp, E. J., Aug 15 2012, 2012 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2012 - Proceedings. p. 198-201 4 p. 6235518. (Proceedings - International Symposium on Biomedical Imaging).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations
2011

Non-rigid registration of multiphoton microscopy images using B-splines

Lorenz, K. S., Salama, P., Dunn, K. W. & Delp, E. J., Jun 9 2011, Medical Imaging 2011: Image Processing. 796221. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 7962).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations
2009

Combined experimental and simulation study of blood clot formation

Xu, Z., Lioi, J., Alber, M., Mu, J., Liu, X., Chen, D. Z., Kamocka, M. M. & Rosen, E. D., Dec 1 2009, TIC-STH'09: 2009 IEEE Toronto International Conference - Science and Technology for Humanity. p. 357-362 6 p. 5444476. (TIC-STH'09: 2009 IEEE Toronto International Conference - Science and Technology for Humanity).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

8 Scopus citations

Segmentation, reconstruction, and analysis of blood thrombi in 2-photon microscopy images

Mu, J., Liu, X., Kamocka, M. M., Xu, Z., Alber, M. S., Rosen, E. D. & Chen, D. Z., Nov 23 2009, 2009 22nd IEEE International Symposium on Computer-Based Medical Systems, CBMS 2009. 5255347. (Proceedings - IEEE Symposium on Computer-Based Medical Systems).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Scopus citations
1999

Cellular mechanisms involved in mechanotransduction

Duncan, R., Brubaker, K., Chen, N., Ajubi, N., Ryder, K. & Pavalko, F., Dec 1 1999, Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings. IEEE, 1 p. (Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings; vol. 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution