Publications 1986 2019

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2019

Nuclei counting in microscopy images with three dimensional generative adversarial networks

Han, S., Lee, S., Fu, C., Salama, P., Dunn, K. & Delp, E. J., Jan 1 2019, Medical Imaging 2019: Image Processing. Landman, B. A., Angelini, E. D., Angelini, E. D. & Angelini, E. D. (eds.). SPIE, 109492Y. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10949).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Three-Dimensional Imaging
Fluorescence microscopy
Fluorescence Microscopy
Microscopy
Microscopic examination
2018
1 Citation (Scopus)

Nuclei detection and segmentation of fluorescence microscopy images using three dimensional convolutional neural networks

Ho, D. J., Fu, C., Salama, P., Dunn, K. & Delp, E. J., May 23 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging, ISBI 2018. IEEE Computer Society, Vol. 2018-April. p. 418-422 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Three-Dimensional Imaging
Fluorescence microscopy
Fluorescence Microscopy
Neural networks
Microscopy

Three dimensional fluorescence microscopy image synthesis and segmentation

Fu, C., Lee, S., Ho, D. J., Han, S., Salama, P., Dunn, K. & Delp, E. J., Dec 13 2018, Proceedings - 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops, CVPRW 2018. IEEE Computer Society, Vol. 2018-June. p. 2302-2310 9 p. 8575470

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fluorescence microscopy
Image quality
Microscopic examination
Tissue
Deep learning
2017
2 Citations (Scopus)

Boundary segmentation for fluorescence microscopy using steerable filters

Ho, D. J., Salama, P., Dunn, K. & Delp, E. J., 2017, Medical Imaging 2017: Image Processing. SPIE, Vol. 10133. 101330E

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fluorescence microscopy
Fluorescence Microscopy
microscopy
filters
fluorescence
6 Citations (Scopus)

Nuclei segmentation of fluorescence microscopy images using convolutional neural networks

Fu, C., Ho, D. J., Han, S., Salama, P., Dunn, K. & Delp, E. J., Jun 15 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE Computer Society, p. 704-708 5 p. 7950617

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fluorescence microscopy
Fluorescence Microscopy
Cytology
Tissue
Neural networks
4 Citations (Scopus)

Nuclei Segmentation of Fluorescence Microscopy Images Using Three Dimensional Convolutional Neural Networks

Ho, D. J., Fu, C., Salama, P., Dunn, K. & Delp, E. J., Aug 22 2017, Proceedings - 30th IEEE Conference on Computer Vision and Pattern Recognition Workshops, CVPRW 2017. IEEE Computer Society, Vol. 2017-July. p. 834-842 9 p. 8014850

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fluorescence microscopy
Tissue
Neural networks
Microscopic examination
Photons
5 Citations (Scopus)

Segmentation of fluorescence microscopy images using three dimensional active contours with inhomogeneity correction

Lee, S., Salama, P., Dunn, K. & Delp, E. J., Jun 15 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE Computer Society, p. 709-713 5 p. 7950618

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Three-Dimensional Imaging
Fluorescence microscopy
Fluorescence Microscopy
Image segmentation
Chemical analysis
2016

Four Dimensional Image Registration for Intravital Microscopy

Fu, C., Gadgil, N., Tahboub, K. K., Salama, P., Dunn, K. & Delp, E. J., Dec 16 2016, Proceedings - 29th IEEE Conference on Computer Vision and Pattern Recognition Workshops, CVPRW 2016. IEEE Computer Society, p. 1390-1398 9 p. 7789665

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Image registration
Tissue
Fluorescence microscopy
Splines
Animals
3 Citations (Scopus)

Jelly filling segmentation of fluorescence microscopy images containing incomplete labeling

Gadgil, N. J., Salama, P., Dunn, K. & Delp, E. J., Jun 15 2016, 2016 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2016 - Proceedings. IEEE Computer Society, Vol. 2016-June. p. 531-535 5 p. 7493324

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fluorescence microscopy
Fluorescence Microscopy
Labeling
Rats
Luminance
9 Citations (Scopus)

Nuclei segmentation of fluorescence microscopy images based on midpoint analysis and marked point process

Gadgil, N. J., Salama, P., Dunn, K. & Delp, E. J., Apr 25 2016, 2016 IEEE Southwest Symposium on Image Analysis and Interpretation, SSIAI 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., Vol. 2016-April. p. 37-40 4 p. 7459169

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fluorescence microscopy
Image analysis
Luminance
Microscopes
Tissue
2015
5 Citations (Scopus)

Boundary fitting based segmentation of fluorescence microscopy images

Lee, S., Salama, P., Dunn, K. & Delp, E. J., 2015, Proceedings of SPIE - The International Society for Optical Engineering. SPIE, Vol. 9408. 940805

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fluorescence Microscopy
Fluorescence microscopy
Microscopic examination
Segmentation
microscopy
1 Citation (Scopus)

Segmentation of vascular structures and hematopoietic cells in 3D microscopy images and quantitative analysis

Mu, J., Yang, L., Kamocka, M., Zollman, A. L., Carlesso, N. & Chen, D. Z., 2015, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE, Vol. 9413. 941305

Research output: Chapter in Book/Report/Conference proceedingConference contribution

image analysis
Image analysis
quantitative analysis
Blood Vessels
Microscopy
2013
11 Citations (Scopus)

Three dimensional segmentation of fluorescence microscopy images using active surfaces

Lorenz, K. S., Salama, P., Dunn, K. & Delp, E. J., 2013, 2013 IEEE International Conference on Image Processing, ICIP 2013 - Proceedings. p. 1153-1157 5 p. 6738238

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fluorescence microscopy
Tissue
Optical microscopy
Rats
Microscopic examination
2012
4 Citations (Scopus)

A multi-resolution approach to non-rigid registration of microscopy images

Lorenz, K. S., Salama, P., Dunn, K. & Delp, E. J., 2012, Proceedings - International Symposium on Biomedical Imaging. p. 198-201 4 p. 6235518

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Image registration
Artifacts
Microscopy
Microscopic examination
Lung
2011
1 Citation (Scopus)

Non-rigid registration of multiphoton microscopy images using B-splines

Lorenz, K. S., Salama, P., Dunn, K. & Delp, E. J., 2011, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. Vol. 7962. 796221

Research output: Chapter in Book/Report/Conference proceedingConference contribution

splines
Splines
Microscopy
Microscopic examination
microscopy
2009
7 Citations (Scopus)

Combined experimental and simulation study of blood clot formation

Xu, Z., Lioi, J., Alber, M., Mu, J., Liu, X., Chen, D. Z., Kamocka, M. & Rosen, E., 2009, TIC-STH'09: 2009 IEEE Toronto International Conference - Science and Technology for Humanity. p. 357-362 6 p. 5444476

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Blood
simulation
Coagulation
activation
Platelets
6 Citations (Scopus)

Segmentation, reconstruction, and analysis of blood thrombi in 2-photon microscopy images

Mu, J., Liu, X., Kamocka, M., Xu, Z., Alber, M. S., Rosen, E. & Chen, D. Z., 2009, Proceedings - IEEE Symposium on Computer-Based Medical Systems. 5255347

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Photons
Microscopy
Microscopic examination
Thrombosis
Blood
1999

Cellular mechanisms involved in mechanotransduction

Duncan, R., Brubaker, K., Chen, X. N., Ajubi, N., Ryder, K. & Pavalko, F., 1999, Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings. IEEE, Vol. 2. p. 1303 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Actins
Fibers
Thapsigargin
Gadolinium
Osteoblasts
1998
5 Citations (Scopus)

Image guided interactive volume visualization for confocal microscopy data exploration

Biddlecome, T., Fang, S., Dunn, K. & Tuceryan, M., 1998, Proceedings of SPIE - The International Society for Optical Engineering. Mun, S. K. & Kim, Y. (eds.). Vol. 3335. p. 130-140 11 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Confocal microscopy
Visualization
microscopy
transfer functions
image processing