Indiana University

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2020

Data mining techniques utilizing latent class models to evaluate emergency department revisits

Ben-Assuli, O. & Vest, J. R., Jan 2020, In : Journal of biomedical informatics. 101, 103341.

Research output: Contribution to journalArticle

Open Access

Dataset for the reporting of carcinoma of the bladder—cystectomy, cystoprostatectomy and diverticulectomy specimens: recommendations from the International Collaboration on Cancer Reporting (ICCR)

Compérat, E., Srigley, J. R., Brimo, F., Delahunt, B., Koch, M., Lopez-Beltran, A., Reuter, V., Samaratunga, H., Shanks, J. H., Tsuzuki, T., van der Kwast, T., Varma, M., Webster, F. & Grignon, D., Apr 1 2020, In : Virchows Archiv. 476, 4, p. 521-534 14 p.

Research output: Contribution to journalArticle

1 Scopus citations

Dataset for the reporting of urinary tract carcinoma—biopsy and transurethral resection specimen: recommendations from the International Collaboration on Cancer Reporting (ICCR)

Varma, M., Srigley, J. R., Brimo, F., Compérat, E., Delahunt, B., Koch, M., Lopez-Beltran, A., Reuter, V., Samaratunga, H., Shanks, J. H., Tsuzuki, T., van der Kwast, T., Webster, F. & Grignon, D., Apr 1 2020, In : Modern Pathology. 33, 4, p. 700-712 13 p.

Research output: Contribution to journalArticle

David A. Boothman, 1958-2019

Criswell, T. L. & Mayo, L. D., Mar 1 2020, In : Radiation research. 193, 3, p. 301-303 3 p.

Research output: Contribution to journalArticle

Decreasing delirium through music: A randomized pilot trial

Khan, S. H., Xu, C., Purpura, R., Durrani Mbbs, S., Lindroth, H., Wang, S., Gao, S., Heiderscheit, A., Chlan, L., Boustani, M. & Khan, B. A., Mar 1 2020, In : American Journal of Critical Care. 29, 2, p. e31-e38

Research output: Contribution to journalArticle

Open Access

Deep learning-based cancer survival prognosis from RNA-seq data: Approaches and evaluations

Huang, Z., Johnson, T. S., Han, Z., Helm, B., Cao, S., Zhang, C., Salama, P., Rizkalla, M., Yu, C. Y., Cheng, J., Xiang, S., Zhan, X., Zhang, J. & Huang, K., Apr 3 2020, In : BMC Medical Genomics. 13, 41.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Delayed iron does not alter cognition or behavior among children with severe malaria and iron deficiency

Ssemata, A. S., Hickson, M., Ssenkusu, J. M., Cusick, S. E., Nakasujja, N., Opoka, R. O., Kroupina, M., Georgieff, M. K., Bangirana, P. & John, C. C., Jan 1 2020, (Accepted/In press) In : Pediatric Research.

Research output: Contribution to journalArticle

Dementia care in radiology

Wolf, L. K. & Gunderman, R. B., Jan 1 2020, In : American Journal of Roentgenology. 214, 1, p. 34-36 3 p.

Research output: Contribution to journalArticle

Density and Dichotomous Family History Measures of Alcohol Use Disorder as Predictors of Behavioral and Neural Phenotypes: A Comparative Study Across Gender and Race/Ethnicity

Pandey, G., Seay, M. J., Meyers, J. L., Chorlian, D. B., Pandey, A. K., Kamarajan, C., Ehrenberg, M., Pitti, D., Kinreich, S., Subbie-Saenz de Viteri, S., Acion, L., Anokhin, A., Bauer, L., Chan, G., Edenberg, H., Hesselbrock, V., Kuperman, S., McCutcheon, V. V., Bucholz, K. K., Schuckit, M. & 1 others, Porjesz, B., Mar 1 2020, In : Alcoholism: Clinical and Experimental Research. 44, 3, p. 697-710 14 p.

Research output: Contribution to journalArticle

Depressive symptom severity as a predictor of attendance in the HOME behavioral weight loss trial

Shell, A. L., Hsueh, L., Vrany, E. A., Clark, D. O., Keith, N. C. R., Xu, H. & Stewart, J. C., Apr 2020, In : Journal of Psychosomatic Research. 131, 109970.

Research output: Contribution to journalArticle

Detecting genetic associations with brain imaging phenotypes in Alzheimer's disease via a novel structured SCCA approach

Du, L., Liu, K., Yao, X., Risacher, S. L., Han, J., Saykin, A. J., Guo, L. & Shen, L., Apr 2020, In : Medical Image Analysis. 61, 101656.

Research output: Contribution to journalArticle

Developing a Core Outcome Set for Cesarean Delivery Maternal Infectious Morbidity Outcomes

Briscoe, K. E. & Haas, D. M., Mar 1 2020, In : American Journal of Perinatology. 37, 4, p. 436-452 17 p.

Research output: Contribution to journalArticle

2 Scopus citations

Developing Student Metacognition through Reflective Writing in an Upper Level Undergraduate Anatomy Course

O’Loughlin, V. D. & Griffith, L. M., Jan 1 2020, (Accepted/In press) In : Anatomical Sciences Education.

Research output: Contribution to journalArticle

Open Access

Development and Retrospective Review of a Pediatric Ethics Consultation Service at a Large Academic Center

Leland, B. D., Wocial, L. D., Drury, K., Rowan, C. M., Helft, P. R. & Torke, A. M., Jan 1 2020, (Accepted/In press) In : HEC Forum.

Research output: Contribution to journalArticle

Development and validation of a prognostic model predicting symptomatic hemorrhagic transformation in acute ischemic stroke at scale in the OHDSI network

Wang, Q., Reps, J. M., Kostka, K. F., Ryan, P. B., Zou, Y., Voss, E. A., Rijnbeek, P. R., Chen, R., Rao, G. A., Stewart, H. M., Williams, A. E., Williams, R. D., Van Zandt, M., Falconer, T., Fernandez-Chas, M., Vashisht, R., Pfohl, S. R., Shah, N. H., Kasthurirathne, S. N., You, S. C. & 3 others, Jiang, Q., Reich, C. & Zhou, Y., Jan 1 2020, In : PloS one. 15, 1, e0226718.

Research output: Contribution to journalArticle

Open Access

Development of a fundamentals of endoscopic surgery proficiency‐based skills curriculum for general surgery residents

Mizota, T., Anton, N. E., Huffman, E. M., Guzman, M. J., Lane, F., Choi, J. N. & Stefanidis, D., Feb 1 2020, In : Surgical endoscopy. 34, 2, p. 771-778 8 p.

Research output: Contribution to journalArticle

2 Scopus citations

Development of a generalized model for kidney depth estimation in the Chinese population: A multi-center study

Li, Q., Pan, Z., Li, Q., Baikpour, M., Cheah, E., Chen, K., Li, W., Song, Y., Zhang, J., Yu, L., Zuo, C., Liu, J., Yang, A., Ding, Z., Li, J., Luo, Y., Li, T., Feng, Y., Yu, S., Xie, L. & 16 others, Luo, G., Wang, Q., Wei, L., Chen, Y., Sun, H., Lin, C., Xu, W., Zhao, W., Peng, X., Wang, C., Han, X., Ba, Y., Zhang, Y., Li, W., Zhang, W. & Yang, H., Mar 2020, In : European Journal of Radiology. 124, 108840.

Research output: Contribution to journalArticle

Development of a SimpleProbe real-Time PCR Assay for rapid detection and identification of the US novel urethrotropic clade of Neisseria meningitidis ST-11 (US_NmUC)

Toh, E., Williams, J. A., Qadadri, B., Ermel, A. & Nelson, D. E., Jan 1 2020, In : PloS one. 15, 2, e0228467.

Research output: Contribution to journalArticle

Open Access

Development of validated checklists to evaluate clinical specialists in pediatric ECMO emergencies using Delphi method

Abulebda, K., Hocutt, G. R. N. C., Gray, B. W., Ahmed, R. A., Slaven, J. E., Malin, S., Wetzel, E. A., Medsker, B. H. & Byrne, B. J., Jan 1 2020, (Accepted/In press) In : ASAIO Journal. p. 314-318 5 p.

Research output: Contribution to journalArticle

1 Scopus citations

Diabetes disclosure strategies in adolescents and young adult with type 1 diabetes

Pihlaskari, A. K., Anderson, B. J., Eshtehardi, S. S., McKinney, B. M., Marrero, D. G., Thompson, D. & Hilliard, M. E., Jan 2020, In : Patient Education and Counseling. 103, 1, p. 208-213 6 p.

Research output: Contribution to journalArticle

Diagnosis and Management of COVID-19 Disease

Jamil, S., Mark, N., Carlos, G., Cruz, C. S. D., Gross, J. E. & Pasnick, S., May 15 2020, In : American journal of respiratory and critical care medicine. 201, 10, p. P19-P20

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Diagnosis and Treatment of Alcohol-Associated Liver Diseases: 2019 Practice Guidance From the American Association for the Study of Liver Diseases

Crabb, D. W., Im, G. Y., Szabo, G., Mellinger, J. L. & Lucey, M. R., Jan 1 2020, In : Hepatology. 71, 1, p. 306-333 28 p.

Research output: Contribution to journalArticle

Open Access
19 Scopus citations

Diagnostic and Prognostic Utilities of Insulin-Like Growth Factor Binding Protein-7 in Patients With Dyspnea

Ibrahim, N. E., Afilalo, M., Chen-Tournoux, A., Christenson, R. H., Gaggin, H. K., Hollander, J. E., Kastner, P., Levy, P. D., Mang, A., Masson, S., Nagurney, J. T., Nowak, R. M., Pang, P. S., Peacock, W. F., Dipl-Stat, V. R., Walters, E. L. & Januzzi, J. L., May 2020, In : JACC: Heart Failure. 8, 5, p. 415-422 8 p.

Research output: Contribution to journalArticle

Diagnostic value of plasma phosphorylated tau181 in Alzheimer’s disease and frontotemporal lobar degeneration

Advancing Research and Treatment for Frontotemporal Lobar Degeneration (ARTFL) investigators, Mar 1 2020, In : Nature Medicine. 26, 3, p. 387-397 11 p.

Research output: Contribution to journalArticle

7 Scopus citations

Differential co-expression analysis reveals early stage transcriptomic decoupling in alzheimer's disease

Upadhyaya, Y., Xie, L., Salama, P., Cao, S., Nho, K., Saykin, A. J., Yan, J. & Alzheimer'S Disease Neuroimaging Initiative, F. T., Apr 3 2020, In : BMC Medical Genomics. 13, 53.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Differentiation of pilocytic and pilomyxoid astrocytomas using dynamic susceptibility contrast perfusion and diffusion weighted imaging

Ho, C. Y., Supakul, N., Patel, P. U., Seit, V., Groswald, M., Cardinal, J., Lin, C. & Kralik, S. F., Jan 1 2020, In : Neuroradiology. 62, 1, p. 81-88 8 p.

Research output: Contribution to journalArticle

Disconnected Pancreatic Duct Syndrome: Spectrum of Operative Management

Maatman, T. K., Roch, A. M., Lewellen, K. A., Heimberger, M. A., Ceppa, E. P., House, M. G., Nakeeb, A., Schmidt, C. M. & Zyromski, N. J., Mar 2020, In : Journal of Surgical Research. 247, p. 297-303 7 p.

Research output: Contribution to journalArticle

2 Scopus citations

Disconnected pancreatic duct syndrome predicts failure of percutaneous therapy in necrotizing pancreatitis: Percutaneous Drain in Necrotizing Pancreatitis

Maatman, T. K., Mahajan, S., Roch, A. M., Ceppa, E. P., House, M. G., Nakeeb, A., Schmidt, C. M. & Zyromski, N. J., Apr 2020, In : Pancreatology. 20, 3, p. 362-368 7 p.

Research output: Contribution to journalArticle

Discovery and Development of Small-Molecule Inhibitors of Glycogen Synthase

Tang, B., Frasinyuk, M. S., Chikwana, V. M., Mahalingan, K. K., Morgan, C. A., Segvich, D. M., Bondarenko, S. P., Mrug, G. P., Wyrebek, P., Watt, D. S., Depaoli-Roach, A. A., Roach, P. J. & Hurley, T. D., Apr 9 2020, In : Journal of Medicinal Chemistry. 63, 7, p. 3538-3551 14 p.

Research output: Contribution to journalArticle

Discrepancy between Stone and Tissue Mineral Type in Patients with Idiopathic Uric Acid Stones

Evan, A. P., Coe, F. L., Worcester, E. M., Williams, J. C., Heiman, J., Bledsoe, S., Sommer, A., Philips, C. L. & Lingeman, J. E., Mar 2020, In : Journal of Endourology. 34, 3, p. 385-393 9 p.

Research output: Contribution to journalArticle

Open Access

DisProt: Intrinsic protein disorder annotation in 2020

Hatos, A., Hajdu-Soltész, B., Monzon, A. M., Palopoli, N., Álvarez, L., Aykac-Fas, B., Bassot, C., Benítez, G. I., Bevilacqua, M., Chasapi, A., Chemes, L., Davey, N. E., Davidović, R., Dunker, A. K., Elofsson, A., Gobeill, J., Foutel, N. S. G., Sudha, G., Guharoy, M., Horvath, T. & 44 others, Iglesias, V., Kajava, A. V., Kovacs, O. P., Lamb, J., Lambrughi, M., Lazar, T., Leclercq, J. Y., Leonardi, E., MacEdo-Ribeiro, S., MacOssay-Castillo, M., Maiani, E., Manso, J. A., Marino-Buslje, C., Martínez-Pérez, E., Mészáros, B., Mičetić, I., Minervini, G., Murvai, N., Necci, M., Ouzounis, C. A., Pajkos, M., Paladin, L., Pancsa, R., Papaleo, E., Parisi, G., Pasche, E., Barbosa Pereira, P. J., Promponas, V. J., Pujols, J., Quaglia, F., Ruch, P., Salvatore, M., Schad, E., Szabo, B., Szaniszló, T., Tamana, S., Tantos, A., Veljkovic, N., Ventura, S., Vranken, W., Dosztányi, Z., Tompa, P., Tosatto, S. C. E. & Piovesan, D., Jan 1 2020, In : Nucleic acids research. 48, D1, p. D269-D276

Research output: Contribution to journalArticle

Open Access
5 Scopus citations

Disrupting nNOS-PSD95 Interaction Improves Neurological and Cognitive Recoveries after Traumatic Brain Injury

Qu, W., Liu, N. K., Wu, X., Wang, Y., Xia, Y., Sun, Y., Lai, Y., Li, R., Shekhar, A. & Xu, X. M., Jun 1 2020, In : Cerebral cortex (New York, N.Y. : 1991). 30, 7, p. 3859-3871 13 p.

Research output: Contribution to journalArticle

Distinct functional alterations in SCN8A epilepsy mutant channels

Pan, Y. & Cummins, T. R., Jan 1 2020, In : Journal of Physiology. 598, 2, p. 381-401 21 p.

Research output: Contribution to journalArticle

1 Scopus citations

Distinct hemodynamic responses to (pyr)apelin-13 in large animal models

Tune, J. D., Baker, H. E., Berwick, Z., Moberly, S. P., Casalini, E. D., Noblet, J. N., Zhen, E., Kowala, M. C., Christe, M. E. & Goodwill, A. G., Apr 2020, In : American Journal of Physiology - Heart and Circulatory Physiology. 318, 4, p. H747-H755

Research output: Contribution to journalArticle

Distinctive Features and Outcomes of Hepatocellular Carcinoma in Patients With Alcohol-Related Liver Disease: A US Multicenter Study

deLemos, A., Patel, M., Gawrieh, S., Burney, H., Dakhoul, L., Miller, E., Scanga, A., Kettler, C., Liu, H., Roche, P., Wattacheril, J. & Chalasani, N., Mar 1 2020, In : Clinical and translational gastroenterology. 11, 3, p. e00139

Research output: Contribution to journalArticle

Open Access

DNA repair and cancer in colon and rectum: Novel players in genetic susceptibility

Pardini, B., Corrado, A., Paolicchi, E., Cugliari, G., Berndt, S. I., Bezieau, S., Bien, S. A., Brenner, H., Caan, B. J., Campbell, P. T., Casey, G., Chan, A. T., Chang-Claude, J., Cotterchio, M., Gala, M., Gallinger, S. J., Haile, R. W., Harrison, T. A., Hayes, R. B., Hoffmeister, M. & 21 others, Hopper, J. L., Hsu, L., Huyghe, J., Jenkins, M. A., Le Marchand, L., Lin, Y., Lindor, N. M., Nan, H., Newcomb, P. A., Ogino, S., Potter, J. D., Schoen, R. E., Slattery, M. L., White, E., Vodickova, L., Vymetalkova, V., Vodicka, P., Gemignani, F., Peters, U., Naccarati, A. & Landi, S., Jan 15 2020, In : International Journal of Cancer. 146, 2, p. 363-372 10 p.

Research output: Contribution to journalArticle

1 Scopus citations

Do Antibiotic-Impregnated Intramedullary Dowels Assist in Eradicating Infection in Total Knee Arthroplasty?

Kheir, M. M. & Meneghini, R. M., Mar 2020, In : Journal of Arthroplasty. 35, 3, p. S50-S52

Research output: Contribution to journalArticle

Does Patellofemoral Disease Affect Outcomes in Contemporary Medial Fixed-Bearing Unicompartmental Knee Arthroplasty?

Deckard, E. R., Jansen, K., Ziemba-Davis, M., Sonn, K. A. & Meneghini, R. M., Jan 1 2020, (Accepted/In press) In : Journal of Arthroplasty.

Research output: Contribution to journalArticle

Open Access

Do Mandated Weight Loss Goals Prior to Bariatric Surgery Improve Postoperative Outcomes?

Monfared, S., Athanasiadis, D. I., Furiya, A., Butler, A., Selzer, D., Hilgendorf, W., Banerjee, A. & Stefanidis, D., Mar 1 2020, In : Obesity Surgery. 30, 3, p. 889-894 6 p.

Research output: Contribution to journalArticle

1 Scopus citations

Doubly robust estimation of causal effect upping the odds of getting the right answers

Li, X. & Shen, C., Jan 1 2020, (Accepted/In press) In : Circulation: Cardiovascular Quality and Outcomes. e006065.

Research output: Contribution to journalArticle

Drug-drug interaction prediction based on co-medication patterns and graph matching

Chiang, W. H., Shen, L., Li, L. & Ning, X., Jan 1 2020, In : International Journal of Computational Biology and Drug Design. 13, 1, p. 36-57 22 p.

Research output: Contribution to journalArticle

Dual inhibition of angiopoietin-Tie2 and MET alters the tumor microenvironment and prolongs survival in a metastatic model of renal cell carcinoma

Elbanna, M., Orillion, A. R., Damayanti, N. P., Adelaiye-Ogala, R., Shen, L., Miles, K. M., Chintala, S., Ciamporcero, E., Ramakrishnan, S., Ku, S. Y., Rex, K., Caenepeel, S., Coxon, A. & Pili, R., Jan 1 2020, In : Molecular cancer therapeutics. 19, 1, p. 147-156 10 p.

Research output: Contribution to journalArticle

3 Scopus citations

Dynamic assessment of the tear film muco-aqueous and lipid layers using a novel tear film imager (TFI)

Segev, F., Geffen, N., Galor, A., Cohen, Y., Gefen, R., Belkin, A., Arieli, Y., Epshtein, S., Oren, A. & Harris, A., Jan 1 2020, In : British Journal of Ophthalmology. 104, 1, p. 136-141 6 p.

Research output: Contribution to journalArticle

4 Scopus citations

Dysregulated Fc gamma receptor–mediated phagocytosis pathway in Alzheimer's disease: network-based gene expression analysis

AddNeuroMed consortium and the Alzheimer's Disease Neuroimaging Initiative, Apr 2020, In : Neurobiology of Aging. 88, p. 24-32 9 p.

Research output: Contribution to journalArticle

Open Access

Early administration of imatinib mesylate reduces plexiform neurofibroma tumor burden with durable results after drug discontinuation in a mouse model of neurofibromatosis type 1

Armstrong, A. E., Rhodes, S. D., Smith, A., Chen, S., Bessler, W., Ferguson, M. J., Jiang, L., Li, X., Yuan, J., Yang, X., Yang, F-C., Robertson, K. A., Ingram, D. A., Blakeley, J. O. & Clapp, D. W., Jan 1 2020, (Accepted/In press) In : Pediatric Blood and Cancer. 67, 8, e28372.

Research output: Contribution to journalArticle

Early failure of sequentially annealed polyethylene in total knee arthroplasty

Sonn, K. A. & Meneghini, R. M., Mar 2020, In : Arthroplasty Today. 6, 1, p. 18-22 5 p.

Research output: Contribution to journalArticle

Open Access

Early outcomes and safety of outpatient (surgery center) vs inpatient based L5-S1 Anterior Lumbar Interbody Fusion

Snowden, R., Fischer, D. & Kraemer, P., Mar 2020, In : Journal of Clinical Neuroscience. 73, p. 183-186 4 p.

Research output: Contribution to journalArticle

Echocardiographic assessment of insulin-like growth factor binding protein-7 and early identification of acute heart failure

Kalayci, A., Peacock, W. F., Nagurney, J. T., Hollander, J. E., Levy, P. D., Singer, A. J., Shapiro, N. I., Cheng, R. K., Cannon, C. M., Blomkalns, A. L., Walters, E. L., Christenson, R. H., Chen-Tournoux, A., Nowak, R. M., Lurie, M. D., Pang, P. S., Kastner, P., Masson, S., Gibson, C. M., Gaggin, H. K. & 1 others, Januzzi, J. L., Jan 1 2020, (Accepted/In press) In : ESC Heart Failure.

Research output: Contribution to journalArticle

Open Access