Indiana University

Publications

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Conference article
2018

Codon bias among synonymous rare variants is associated with alzheimer’s disease imaging biomarker

Alzheimer’s Disease Neuroimaging Initiative (ADNI), Jan 1 2018, In : Pacific Symposium on Biocomputing. 0, 212669, p. 365-376 12 p.

Research output: Contribution to journalConference article

4 Scopus citations

Imaging genomics

Huang, H., Shen, L., Thompson, P. M., Huang, K., Huang, J. & Yang, L., Jan 1 2018, In : Pacific Symposium on Biocomputing. 0, 212669, p. 304-306 3 p.

Research output: Contribution to journalConference article

4 Scopus citations

Using the oral health and disease ontology to study dental outcomes in national dental PBRN practices

Duncan, W. D., Hyvalikakath, T. P., Siddiqui, Z., LaPradd, M., Wen, C., Zheng, J., Roberts, A., Hood, D., Schleyer, T., Manimangalam, A., Rindal, D. B., Jurkovich, M. W., Shea, T. L., Bogacz, D., Yu, T., Fellows, J. L., Gordan, V. V. & Gilbert, G. H., Jan 1 2018, In : CEUR Workshop Proceedings. 2285

Research output: Contribution to journalConference article

2017

Flow feature to extract pulsatile blood flow from 4D flow MRI images

Wang, Z., Zhao, Y., Yu, W., Chen, X., Li, C., Kralik, S. F. & Hutchins, G. D., Feb 3 2017, In : Proceedings of SPIE - The International Society for Optical Engineering. 10327, 60.

Research output: Contribution to journalConference article

Identification of discriminative imaging proteomics associations in Alzheimer’s disease via a novel sparse correlation model

Alzheimer's Disease Neuroimaging Initiative, Jan 1 2017, In : Pacific Symposium on Biocomputing. 0, 212679, p. 94-104 11 p.

Research output: Contribution to journalConference article

Open Access
3 Scopus citations

Unified representation of tractography and diffusion-weighted MRI data using sparse multidimensional arrays

Caiafa, C. F., Sporns, O., Saykin, A. & Pestilli, F., Jan 1 2017, In : Advances in Neural Information Processing Systems. 2017-December, p. 4341-4352 12 p.

Research output: Contribution to journalConference article

3 Scopus citations
2016

Diagnosis-guided method for identifying multi-modality neuroimaging biomarkers associated with genetic risk factors in Alzheimer’s disease

Hao, X., Yan, J., Yao, X., Risacher, S. L., Saykin, A. J., Zhang, D. & Shen, L., Jan 1 2016, In : Pacific Symposium on Biocomputing. p. 108-119 12 p.

Research output: Contribution to journalConference article

3 Scopus citations

Monitoring potential drug interactions and reactions via network analysis of instagram user timelines

Correia, R. B., Li, L. & Rocha, L. M., Jan 1 2016, In : Pacific Symposium on Biocomputing. p. 492-503 12 p.

Research output: Contribution to journalConference article

17 Scopus citations
2015

Building a chemical-protein interactome on the open science grid

Quick, R., Hayashi, S., Meroueh, S., Rynge, M., Teige, S., Wang, B. & Xu, D., Jan 1 2015, In : Proceedings of Science. 15-20-March-2015, 024.

Research output: Contribution to journalConference article

2014

Investigation of nutrient transport mechanisms in the lacunae-canaliculi system

Scheiner, S., Théoval, A., Pivonka, P., Smith, D. W. & Bonewald, L. F., Jan 1 2014, In : IOP Conference Series: Materials Science and Engineering. 10, 1, 012129.

Research output: Contribution to journalConference article

Measuring protein interactions using förster resonance energy transfer and fluorescence lifetime imaging microscopy

Day, R. N., Aug 1 2014, In : Microscopy and Microanalysis. 20, 3, p. 2130-2131 2 p.

Research output: Contribution to journalConference article

2013

Evaluation of linear classifiers on articles containing pharmacokinetic evidence of drug-drug interactions

Kolchinsky, A., Lourenço, A., Li, L. & Rocha, L. M., Jan 1 2013, In : Pacific Symposium on Biocomputing. p. 409-420 12 p.

Research output: Contribution to journalConference article

11 Scopus citations

Experience-dependent learning effects in speech production with spectrally degraded feedback

Casserly, E. & Pisoni, D. B., Jun 19 2013, In : Proceedings of Meetings on Acoustics. 19, 060148.

Research output: Contribution to journalConference article

Representing intracoronal tooth restorations in the ontology for oral health and disease

Duncan, W., Schleyer, T. & Ruttenberg, A., Jan 1 2013, In : CEUR Workshop Proceedings. 1060, p. 109-112 4 p.

Research output: Contribution to journalConference article

Ultrasound intensity to propel stones from the kidney is below the threshold for renal injury

Wang, Y. N., Simon, J. C., Cunitz, B., Starr, F., Paun, M., Liggitt, D., Evan, A., McAteer, J., Williams, J., Liu, Z., Kaczkowski, P., Hsi, R., Sorensen, M., Harper, J. & Bailey, M. R., Jun 19 2013, In : Proceedings of Meetings on Acoustics. 19, 075066.

Research output: Contribution to journalConference article

Voice-onset time in infant-directed speech over the first year and a half

Burnham, E., Gamache, J. L., Bergeson, T. & Dilley, L., Jun 19 2013, In : Proceedings of Meetings on Acoustics. 19, 060094.

Research output: Contribution to journalConference article

1 Scopus citations
2012

Intrinsic protein disorder and protein-protein interactions

Hsu, W. L., Oldfield, C., Meng, J., Huang, F., Xue, B., Uversky, V. N., Romero, P. & Dunker, A. K., Jan 1 2012, In : Pacific Symposium on Biocomputing. p. 116-127 12 p.

Research output: Contribution to journalConference article

50 Scopus citations

Law, bioethics and the current status of ownership, privacy, informed consent in the genomic age

Hampikian, G. & Meslin, E. M., Jan 1 2012, In : Pacific Symposium on Biocomputing. 1 p.

Research output: Contribution to journalConference article

Subclassifying disordered proteins by the CH-CDF plot method

Huang, F., Oldfield, C., Meng, J., Hsu, W. L., Xue, B., Uversky, V. N., Romero, P. & Dunker, A. K., Jan 1 2012, In : Pacific Symposium on Biocomputing. p. 128-139 12 p.

Research output: Contribution to journalConference article

48 Scopus citations
2011
Open Access
10 Scopus citations

Hippocampal surface mapping of genetic risk factors in AD via sparse learning models

Wan, J., Kim, S., Inlow, M., Nho, K., Swaminathan, S., Risacher, S. L., Fang, S., Weiner, M. W., Beg, M. F., Wang, L., Saykin, A. J. & Shen, L., Oct 11 2011, In : Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6892 LNCS, PART 2, p. 376-383 8 p.

Research output: Contribution to journalConference article

Open Access
20 Scopus citations
2010

Development of the Reinvigorating Engineering and Changing History (REACH) program: A cohort experience for first-time Graduate Students

Cox, M., Lynch, C., Zhu, J., Dunston, P., Fentiman, A., Shaw, P. & Evangelou, D., Jan 1 2010, In : ASEE Annual Conference and Exposition, Conference Proceedings.

Research output: Contribution to journalConference article

1 Scopus citations
2009

A comparison of Terahertz Pulsed Imaging with transverse microradiography and microhardness to measure mineral changes in enamel after treatment with fluoride dentifrices

Churchley, D., Lippert, F., Lynch, R., Alton, J., Gonzalez-Cabezas, C. & Eder, J., May 13 2009, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 7162, 716203.

Research output: Contribution to journalConference article

2008

Requirements for expertise location systems in biomedical science and the Semantic Web

Schleyer, T., Spallek, H., Butler, B. S., Subramanian, S., Weiss, D., Poythress, M. L., Rattanathikum, P. & Mueller, G., Dec 1 2008, In : CEUR Workshop Proceedings. 403, p. 31-41 11 p.

Research output: Contribution to journalConference article

2 Scopus citations
2005

An interactive 3D visualization and manipulation tool for effective assessment of angiogenesis and arteriogenesis using computed tomographic angiography

Shen, L., Gao, L., Zhuang, Z., DeMuinck, E., Huang, H., Makedon, F. & Pearlman, J., Aug 16 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5744, II, p. 848-858 11 p., 98.

Research output: Contribution to journalConference article

1 Scopus citations

Functional analysis of cardiac MR images using SPHARM modeling

Huang, H., Shen, L., Ford, J., Makedon, F., Zhang, R., Gao, L. & Pearlman, J., Aug 25 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5747, II, p. 1384-1391 8 p., 158.

Research output: Contribution to journalConference article

10 Scopus citations

Subsequence matching on structured time series data

Wu, H., Jiang, S. B., Salzberg, B., Shirato, H., Sharp, G. C. & Kaeli, D., Dec 1 2005, In : Proceedings of the ACM SIGMOD International Conference on Management of Data. p. 682-693 12 p.

Research output: Contribution to journalConference article

39 Scopus citations
2004

Automated image analysis to quantify the subnuclear organization of transcriptional coregulatory protein complexes in living cell populations

Voss, T. C., Demarco, I. A., Booker, C. F. & Day, R. N., Nov 16 2004, In : Proceedings of SPIE - The International Society for Optical Engineering. 5329, p. 99-106 8 p.

Research output: Contribution to journalConference article

Data Brokers: Building collections through automated negotiation

Makedon, F., Ye, S., Zhang, S., Ford, J., Shen, L. & Kapidakis, S., Dec 9 2004, In : Lecture Notes in Artificial Intelligence (Subseries of Lecture Notes in Computer Science). 3025, p. 13-22 10 p.

Research output: Contribution to journalConference article

2 Scopus citations

Efficient similarity retrieval for temporal shape sequences: A case study using cardiac MR images

Huang, H., Makedon, F., Ford, J., Shen, L., Wang, Y., Steinberg, T., Gao, L. & Pearlman, J., Dec 1 2004, In : Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings. 26 V, p. 3250-3253 4 p.

Research output: Contribution to journalConference article

1 Scopus citations

Extraction of discriminative functional MRI activation patterns and an application to Alzheimer's disease

Kontos, D., Megalooikonomou, V., Pokrajac, D., Lazarevic, A., Obradovic, Z., Boyko, O. B., Ford, J., Makedon, F. & Saykin, A. J., Dec 1 2004, In : Lecture Notes in Computer Science. 3217, 1 PART 2, p. 727-735 9 p.

Research output: Contribution to journalConference article

16 Scopus citations

Feature extraction of the atrial fibrillation signal using the continuous wavelet transform

Lee, K. W., Everett IV, T. H., Ilhan, H. T., Linscott, I. & Olgin, J. E., Dec 1 2004, In : Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings. 26 I, p. 275-278 4 p.

Research output: Contribution to journalConference article

7 Scopus citations

FLIM-FRET microscopy to visualize transcription factor interactions in the nucleus of the living cell

Day, R. N., Demarco, I. A., Voss, T. C., Chen, Y. & Periasamy, A., Oct 27 2004, In : Proceedings of SPIE - The International Society for Optical Engineering. 5323, p. 36-43 8 p.

Research output: Contribution to journalConference article

2 Scopus citations

Online event-driven subsequence matching over financial data streams

Wu, H., Salzberg, B. & Zhang, D., Jul 27 2004, In : Proceedings of the ACM SIGMOD International Conference on Management of Data. p. 23-34 12 p.

Research output: Contribution to journalConference article

91 Scopus citations
3 Scopus citations
2003

Exercise can reverse the phenotype of Biglycan deficient mice

Wallace, J. M., Rajachar, R. M., Chen, X. D., Shi, S., Allen, M. R., Bloomfield, S. A., Robey, P. G., Young, M. F. & Kohn, D. H., Jan 1 2003, In : American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. 55, p. 37-38 2 p.

Research output: Contribution to journalConference article

Hippocampal shape analysis: Surface-based representation and classification

Shen, L., Ford, J., Makedon, F. & Saykin, A., Sep 15 2003, In : Proceedings of SPIE - The International Society for Optical Engineering. 5032 I, p. 253-264 12 p.

Research output: Contribution to journalConference article

33 Scopus citations

Intra-operative epicardial lesions in the atria using a multielectrode RF system

Panescu, D., Michael Mangrum, J., Everett, T. H., Li, H. & Haines, D. E., Dec 1 2003, In : Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings. 1, p. 148-150 3 p.

Research output: Contribution to journalConference article

1 Scopus citations

Morphometric analysis of brain structures for improved discrimination

Shen, L., Ford, J., Makedon, F., Wang, Y., Steinberg, T., Ye, S. & Saykin, A., Dec 1 2003, In : Lecture Notes in Computer Science. 2879, PART 2, p. 513-520 8 p.

Research output: Contribution to journalConference article

8 Scopus citations

Patient classification of fMRI activation maps

Ford, J., Farid, H., Makedon, F., Flashman, L. A., McAllister, T. W., Megalooikonomou, V. & Saykin, A. J., Dec 1 2003, In : Lecture Notes in Computer Science. 2879, PART 2, p. 58-65 8 p.

Research output: Contribution to journalConference article

37 Scopus citations

Quantification of retinopathy of prematurity via vessel segmentation

Jomier, J., Wallace, D. K. & Aylward, S. R., Dec 1 2003, In : Lecture Notes in Computer Science. 2879, PART 2, p. 620-626 7 p.

Research output: Contribution to journalConference article

20 Scopus citations

Quantifying evolving processes in multimodal 3D medical images

Wang, Y., Steinberg, T., Makedon, F., Ford, J., Wishart, H. & Saykin, A., Dec 1 2003, In : Lecture Notes in Computer Science. 2879, PART 2, p. 101-108 8 p.

Research output: Contribution to journalConference article

1 Scopus citations

Using Clinical Information and Nonlinear EEG Analysis for Diagnosis of Dementia

Cohen, M. E., Hudson, D. L., Chang, F. L. & Kramer, M., Dec 1 2003, In : Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings. 3, p. 2299-2302 4 p.

Research output: Contribution to journalConference article

2002
9 Scopus citations

Angle closure in younger patients

Chang, B. M., Liebmann, J. M., Ritch, R., Cantor, L. B., Bobrow, J. C., Flach, A. J., Biglan, A. W. & Tasman, W., Jan 1 2002, In : Transactions of the American Ophthalmological Society. 100, p. 201-214 14 p.

Research output: Contribution to journalConference article

16 Scopus citations

Correction of motion artifact in cardiac optical mapping using image registration technique

Rohde, G. K., Sidorov, V., Aldroubi, A., Dawant, B. M. & Lin, S. F., Dec 1 2002, In : Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings. 2, p. 1375-1376 2 p.

Research output: Contribution to journalConference article

2 Scopus citations

Delta-9-tetrahydrocannabinol (THC) in the treatment of end-stage open-angle glaucoma

Flach, A. J., Anderson, D. R., Spaeth, G. L. & Cantor, L. B., Dec 1 2002, In : Transactions of the American Ophthalmological Society. 100, p. 215-224 10 p.

Research output: Contribution to journalConference article

24 Scopus citations

Endocardial detection of repolarization alternans

Christini, D. J., Stein, K. M., Hao, S. C., Markowitz, S. M., Mittal, S., Slotwiner, D. J., Wai, S., Das, M. K. & Lerman, B. B., Dec 1 2002, In : Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings. 2, p. 1363-1364 2 p.

Research output: Contribution to journalConference article