Indiana University

Publications

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Conference article
2018

Codon bias among synonymous rare variants is associated with alzheimer’s disease imaging biomarker

Alzheimer’s Disease Neuroimaging Initiative (ADNI), 2018, In : Pacific Symposium on Biocomputing. 0, 212669, p. 365-376 12 p.

Research output: Contribution to journalConference article

5 Scopus citations

Imaging genomics

Huang, H., Shen, L., Thompson, P. M., Huang, K., Huang, J. & Yang, L., Jan 1 2018, In : Pacific Symposium on Biocomputing. 0, 212669, p. 304-306 3 p.

Research output: Contribution to journalConference article

2 Scopus citations
5 Scopus citations

Using the oral health and disease ontology to study dental outcomes in national dental PBRN practices

Duncan, W. D., Hyvalikakath, T. P., Siddiqui, Z., LaPradd, M., Wen, C., Zheng, J., Roberts, A., Hood, D., Schleyer, T., Manimangalam, A., Rindal, D. B., Jurkovich, M. W., Shea, T. L., Bogacz, D., Yu, T., Fellows, J. L., Gordan, V. V. & Gilbert, G. H., Jan 1 2018, In : CEUR Workshop Proceedings. 2285

Research output: Contribution to journalConference article

2017

Flow feature to extract pulsatile blood flow from 4D flow MRI images

Wang, Z., Zhao, Y., Yu, W., Chen, X., Li, C., Kralik, S. F. & Hutchins, G. D., Feb 3 2017, In : Proceedings of SPIE - The International Society for Optical Engineering. 10327, 60.

Research output: Contribution to journalConference article

Identification of discriminative imaging proteomics associations in Alzheimer’s disease via a novel sparse correlation model

Alzheimer's Disease Neuroimaging Initiative, Jan 1 2017, In : Pacific Symposium on Biocomputing. 0, 212679, p. 94-104 11 p.

Research output: Contribution to journalConference article

Open Access
3 Scopus citations

Unified representation of tractography and diffusion-weighted MRI data using sparse multidimensional arrays

Caiafa, C. F., Sporns, O., Saykin, A. & Pestilli, F., Jan 1 2017, In : Advances in Neural Information Processing Systems. 2017-December, p. 4341-4352 12 p.

Research output: Contribution to journalConference article

4 Scopus citations
2016

Diagnosis-guided method for identifying multi-modality neuroimaging biomarkers associated with genetic risk factors in Alzheimer’s disease

Hao, X., Yan, J., Yao, X., Risacher, S. L., Saykin, A. J., Zhang, D. & Shen, L., Jan 1 2016, In : Pacific Symposium on Biocomputing. p. 108-119 12 p.

Research output: Contribution to journalConference article

3 Scopus citations

Monitoring potential drug interactions and reactions via network analysis of instagram user timelines

Correia, R. B., Li, L. & Rocha, L. M., 2016, In : Pacific Symposium on Biocomputing. p. 492-503 12 p.

Research output: Contribution to journalConference article

19 Scopus citations
2014

Measuring protein interactions using förster resonance energy transfer and fluorescence lifetime imaging microscopy

Day, R. N., Aug 1 2014, In : Microscopy and Microanalysis. 20, 3, p. 2130-2131 2 p.

Research output: Contribution to journalConference article

2013

Evaluation of linear classifiers on articles containing pharmacokinetic evidence of drug-drug interactions

Kolchinsky, A., Lourenço, A., Li, L. & Rocha, L. M., Jan 1 2013, In : Pacific Symposium on Biocomputing. p. 409-420 12 p.

Research output: Contribution to journalConference article

11 Scopus citations

Representing intracoronal tooth restorations in the ontology for oral health and disease

Duncan, W., Schleyer, T. & Ruttenberg, A., Jan 1 2013, In : CEUR Workshop Proceedings. 1060, p. 109-112 4 p.

Research output: Contribution to journalConference article

Ultrasound intensity to propel stones from the kidney is below the threshold for renal injury

Wang, Y. N., Simon, J. C., Cunitz, B., Starr, F., Paun, M., Liggitt, D., Evan, A., McAteer, J., Williams, J., Liu, Z., Kaczkowski, P., Hsi, R., Sorensen, M., Harper, J. & Bailey, M. R., Jun 19 2013, In : Proceedings of Meetings on Acoustics. 19, 075066.

Research output: Contribution to journalConference article

2012

Intrinsic protein disorder and protein-protein interactions

Hsu, W. L., Oldfield, C., Meng, J., Huang, F., Xue, B., Uversky, V. N., Romero, P. & Dunker, A. K., Jan 1 2012, In : Pacific Symposium on Biocomputing. p. 116-127 12 p.

Research output: Contribution to journalConference article

50 Scopus citations

Law, bioethics and the current status of ownership, privacy, informed consent in the genomic age

Hampikian, G. & Meslin, E. M., Jan 1 2012, In : Pacific Symposium on Biocomputing. 1 p.

Research output: Contribution to journalConference article

Subclassifying disordered proteins by the CH-CDF plot method

Huang, F., Oldfield, C., Meng, J., Hsu, W. L., Xue, B., Uversky, V. N., Romero, P. & Dunker, A. K., Jan 1 2012, In : Pacific Symposium on Biocomputing. p. 128-139 12 p.

Research output: Contribution to journalConference article

49 Scopus citations
2011

Hippocampal surface mapping of genetic risk factors in AD via sparse learning models

Wan, J., Kim, S., Inlow, M., Nho, K., Swaminathan, S., Risacher, S. L., Fang, S., Weiner, M. W., Beg, M. F., Wang, L., Saykin, A. J. & Shen, L., Oct 11 2011, In : Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6892 LNCS, PART 2, p. 376-383 8 p.

Research output: Contribution to journalConference article

Open Access
21 Scopus citations
2010

Development of the Reinvigorating Engineering and Changing History (REACH) program: A cohort experience for first-time Graduate Students

Cox, M., Lynch, C., Zhu, J., Dunston, P., Fentiman, A., Shaw, P. & Evangelou, D., Jan 1 2010, In : ASEE Annual Conference and Exposition, Conference Proceedings.

Research output: Contribution to journalConference article

1 Scopus citations
2004

Extraction of discriminative functional MRI activation patterns and an application to Alzheimer's disease

Kontos, D., Megalooikonomou, V., Pokrajac, D., Lazarevic, A., Obradovic, Z., Boyko, O. B., Ford, J., Makedon, F. & Saykin, A. J., Dec 1 2004, In : Lecture Notes in Computer Science. 3217, 1 PART 2, p. 727-735 9 p.

Research output: Contribution to journalConference article

16 Scopus citations
2001

Ultrasound-guided localized detection of cavitation during lithotripsy in pig kidney in vivo

Sapozhnikov, O. A., Bailey, M. R., Crum, L. A., Miller, N. A., Cleveland, R. O., Pishchalnikov, Y. A., Pishchalnikova, I. V., McAteer, J. A., Connors, B. A., Blomgren, P. M. & Evan, A. P., Dec 1 2001, In : Proceedings of the IEEE Ultrasonics Symposium. 2, p. 1347-1350 4 p.

Research output: Contribution to journalConference article

10 Scopus citations
2000

Characteristics of bremsstrahlung in electron beams

Zhu, T. C., Das, I. J. & Bjärngard, B. E., Dec 1 2000, In : Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings. 4, p. 2498-2501 4 p.

Research output: Contribution to journalConference article

Comparison of reflectance spectra of sound and carious enamel

Analoui, M., Ando, M. & Stookey, G. K., Jan 1 2000, In : Proceedings of SPIE - The International Society for Optical Engineering. 3910, p. 227-234 8 p.

Research output: Contribution to journalConference article

2 Scopus citations

Dosimetric verification of gynecological implants

Arjomandy, B., Rajotte, M. & Das, I. J., Dec 1 2000, In : Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings. 4, p. 2771-2773 3 p.

Research output: Contribution to journalConference article

Glaucoma in patients with optic nerve head drusen

Sherman, J., Yang, A. & Harris, A., 2000, In : Optometry and Vision Science. 77, 12 SUPPL., 1 p.

Research output: Contribution to journalConference article

In vivo detection of cavitation induced by lithotripsy shock waves in pig kidney

Sapozhnikov, O., Bailey, M., Crum, L., Cleveland, R., Vaezy, S., McAteer, J. & Evan, A., Jan 1 2000, In : Ultrasound in Medicine and Biology. 26, SUPPL. 2, p. A64

Research output: Contribution to journalConference article

Noninvasive surgery of prostate tissue by high intensity focused ultrasound: An updated report

Sanghvi, N. T., Syrus, J., Foster, R. S., Bihrle, R., Casey, R. & Uchida, T., Jan 1 2000, In : Proceedings of SPIE - The International Society for Optical Engineering. 3907, p. 194-200 7 p.

Research output: Contribution to journalConference article

2 Scopus citations

Roles for nitric oxide in venular-to-arteriolar and arteriolar-to-arteriolar communication

Bohlen, G., Dec 1 2000, In : Annals of Biomedical Engineering. 28, SUPPL. 1, p. S-71-S-72

Research output: Contribution to journalConference article

1999

Clinical validation of the use of fluorescence for the early detection of dental caries

Stookey, G. K., Isaacs, R. L., Zandona, A. F., Ando, M., Gonzalez, C., Mau, M. S., Kelly, S. A. & Analoui, M., Jan 1 1999, In : Proceedings of SPIE - The International Society for Optical Engineering. 3593, p. 154-157 4 p.

Research output: Contribution to journalConference article

3 Scopus citations

Comparison of light-induced and laser-induced fluorescence methods for the detection and quantification of enamel demineralization

Ando, M., Analoui, M., Schemehorn, B. & Stookey, G., Jan 1 1999, In : Proceedings of SPIE - The International Society for Optical Engineering. 3593, p. 148-153 6 p.

Research output: Contribution to journalConference article

5 Scopus citations

Experimental studies of using of split beam transducer for prostate cancer therapy in comparison to single beam transducer

Wu, J. S. J., Sanghvi, N. T., Phillips, M. H., Kuznetsov, M., Foster, R. S., Bihrle, R., Gardner, T. A. & Umemura, S. I., Dec 1 1999, In : Proceedings of the IEEE Ultrasonics Symposium. 2, p. 1443-1446 4 p.

Research output: Contribution to journalConference article

7 Scopus citations
1998

Image guided interactive volume visualization for confocal microscopy data exploration

Biddlecome, T., Fang, S., Dunn, K. & Tuceryan, M., Dec 1 1998, In : Proceedings of SPIE - The International Society for Optical Engineering. 3335, p. 130-140 11 p.

Research output: Contribution to journalConference article

5 Scopus citations

What is done, what is needed and what is realistic to expect from medical informatics standards

McDonald, C. J., Overhage, J. M., Dexter, P., Takesue, B. & Suico, J. G., Feb 1 1998, In : International Journal of Medical Informatics. 48, 1-3, p. 5-12 8 p.

Research output: Contribution to journalConference article

30 Scopus citations
1997

Investigations into treatment strategies aiding the immune response to Haemophilus influenzae

Rundell, A., DeCarlo, R., Balakrishnan, V. & HogenEsch, H., Jan 1 1997, In : Proceedings of the American Control Conference. 1, p. 208-212 5 p.

Research output: Contribution to journalConference article

1 Scopus citations
1994

High intensity focused ultrasound (HIFU) for the treatment of rectal tumors: a feasibility study

Sanghvi, N. T., Hawes, R., Kopecky, K., Gress, F., Ikenberry, S., Cummings, O., Zaidi, S. & Hennige, C., 1994, In : Proceedings of the IEEE Ultrasonics Symposium. 3, p. 1895-1899 5 p.

Research output: Contribution to journalConference article

1 Scopus citations
1993

Cytochemical localization of free-radical-derived oxidants in human coronary atherectomy plaques

Ellis, E. A., Grant, M. B. & Wargovich, T. J., Dec 1 1993, In : Proceedings - Annual Meeting, Microscopy Society of America. p. 318-319 2 p.

Research output: Contribution to journalConference article

1987

MICROANATOMY AND THE STRUCTURE OF BONE.

Burr, D. B., Jan 1 1987, In : American Society of Mechanical Engineers, Applied Mechanics Division, AMD. 84, p. 271-274 4 p.

Research output: Contribution to journalConference article