A. Dunker

  • 28960 Citations
  • 82 h-Index
1969 …2019
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Publications 1969 2019

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Conference contribution
2009
16 Citations (Scopus)

A new machine learning approach for protein phosphorylation site prediction in plants

Gao, J., Agrawal, G. K., Thelen, J. J., Obradovic, Z., Dunker, A. & Xu, D., 2009, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Vol. 5462 LNBI. p. 18-29 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5462 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Protein Phosphorylation
Phosphorylation
Learning systems
Machine Learning
Proteins
4 Citations (Scopus)

Protein sequence alignment and structural disorder: A substitution matrix for an extended alphabet

Midic, U., Dunker, A. & Obradovic, Z., 2009, Proceedings of the KDD-09 Workshop on Statistical and Relational Learning in Bioinformatics, StReBio '09. p. 27-31 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Sequence Alignment
Substitution reactions
Proteins
Amino acids
Amino Acids
2007
1 Citation (Scopus)

Intrinsically disordered proteins: An update

Dunker, A., Oldfield, C. J., Meng, J., Romero, P., Yang, J. Y., Obradovic, Z. & Uversky, V. N., 2007, Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE. p. 49-58 10 p. 4375544

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Intrinsically Disordered Proteins
Proteins
Textbooks
Biochemistry
Neural networks
2005
4 Citations (Scopus)

Improving protein secondary-structure prediction by predicting ends of secondary-structure segments

Midic, U., Dunker, A. & Obradovic, Z., 2005, Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB '05. Vol. 2005. 1594959

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Proteins
Amino acids
Neural networks
35 Citations (Scopus)

Intrinsic disorder and prote in modifications: Building an SVM predictor for methylation

Daily, K. M., Radivojac, P. & Dunker, A., 2005, Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB '05. Vol. 2005. 1594957

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Methylation
Arginine
Proteins
Support vector machines
Screening
2004
26 Citations (Scopus)

Feature selection filters based on the permutation test

Radivojac, P., Obradovic, Z., Dunker, A. & Vucetic, S., 2004, Lecture Notes in Artificial Intelligence (Subseries of Lecture Notes in Computer Science). Boulicaut, J-F., Esposito, F., Pedreschi, D. & Giannotti, F. (eds.). Vol. 3201. p. 334-346 13 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Permutation Test
p-Value
Feature Selection
Feature extraction
Filtering
2002
1 Citation (Scopus)

The benefit of intrinsic disorder information in neural network prediction of calmodulin binding targets

O'Connor, T. R., Lawson, J. D. & Dunker, A., 2002, Proceedings of the International Joint Conference on Neural Networks. Vol. 1. p. 296-299 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Calmodulin
Neural networks
Order disorder transitions
Calcium
Proteins
2001
14 Citations (Scopus)

Methods for improving protein disorder prediction

Vucetic, S., Radivojac, P., Obradovic, Z., Brown, C. J. & Dunker, A., 2001, Proceedings of the International Joint Conference on Neural Networks. Vol. 4. p. 2718-2723 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Proteins
Classifiers
Neural networks
Logistics
1997
199 Citations (Scopus)

Identifying disordered regions in proteins from amino acid sequence

Romero, P., Obradovi, Z., Kissinger, C., Villafranca, J. E. & Dunker, A., 1997, IEEE International Conference on Neural Networks - Conference Proceedings. IEEE, Vol. 1. p. 90-95 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Amino acids
Neural networks
Proteins
Molecular recognition
Carboxylic acids
1995
1 Citation (Scopus)

Identifying repeated structural elements in folded proteins

Miller, R. T., Douthart, R. J. & Dunker, A., 1995, Proceedings of the Hawaii International Conference on System Sciences. Nunamaker, J. F. & Sprague, R. H. J. (eds.). Publ by IEEE, Vol. 5. p. 235-244 10 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Proteins
Amino acids
Polypeptides
Dihedral angle
Specifications

Protein structure prediction. Introduction to session

Dunker, A. & Lathrop, R. H., 1995, Proceedings of the Hawaii International Conference on System Sciences. Nunamaker, J. F. & Sprague, R. H. J. (eds.). Publ by IEEE, Vol. 5. p. 295 1 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Proteins
Protein folding
Molecular biology
DNA sequences
Combinatorial optimization
1993
1 Citation (Scopus)

An alphabet of amino acid conformations in protein

Miller, R. T., Douthart, R. J. & Dunker, A., Jan 1 1993, Proceedings of the 26th Hawaii International Conference on System Sciences, HICSS 1993. IEEE Computer Society, p. 689-698 10 p. 270672. (Proceedings of the Annual Hawaii International Conference on System Sciences; vol. 1).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Conformations
Amino acids
Proteins
Dihedral angle
Angle measurement