Sha Cao

  • 160 Citations
  • 6 h-Index
20142020

Research output per year

If you made any changes in Pure these will be visible here soon.

Publications

  • 160 Citations
  • 6 h-Index
  • 25 Article
  • 2 Review article
  • 1 Letter
Filter
Article
2020

A Bayesian adaptive phase I/II clinical trial design with late-onset competing risk outcomes

Zhang, Y., Cao, S., Zhang, C., Jin, I. H. & Zang, Y., 2020, (Accepted/In press) In : Biometrics.

Research output: Contribution to journalArticle

Aptamer based proteomic pilot study reveals a urine signature indicative of pediatric urinary tract infections

Dong, L., Watson, J., Cao, S., Arregui, S., Saxena, V., Ketz, J., Awol, A. K., Cohen, D. M., Caterino, J. M., Hains, D. S. & Schwaderer, A. L., Jul 2020, In : PloS one. 15, 7 July, e0235328.

Research output: Contribution to journalArticle

Open Access

Co-expression based cancer staging and application

Yu, X., Cao, S., Zhou, Y., Yu, Z. & Xu, Y., Dec 1 2020, In : Scientific reports. 10, 1, 10624.

Research output: Contribution to journalArticle

Open Access

Deep learning-based cancer survival prognosis from RNA-seq data: Approaches and evaluations

Huang, Z., Johnson, T. S., Han, Z., Helm, B., Cao, S., Zhang, C., Salama, P., Rizkalla, M., Yu, C. Y., Cheng, J., Xiang, S., Zhan, X., Zhang, J. & Huang, K., Apr 3 2020, In : BMC Medical Genomics. 13, 41.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Differential co-expression analysis reveals early stage transcriptomic decoupling in alzheimer's disease

Upadhyaya, Y., Xie, L., Salama, P., Cao, S., Nho, K., Saykin, A. J., Yan, J. & Alzheimer'S Disease Neuroimaging Initiative, F. T., Apr 3 2020, In : BMC Medical Genomics. 13, 53.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Lysine-specific demethylase 1 mediates Akt activity and promotes epithelial-to-mesenchymal transition in PIK3CA-mutant colorectal cancer

Miller, S. A., Policastro, R. A., Savant, S. S., Sriramkumar, S., Ding, N., Lu, X., Mohammad, H. P., Cao, S., Kalin, J. H., Cole, P. A., Zentner, G. E. & O'Hagan, H. M., Feb 1 2020, In : Molecular Cancer Research. 18, 2, p. 264-277 14 p.

Research output: Contribution to journalArticle

2 Scopus citations

On the Use of Marker Strategy Design to Detect Predictive Marker Effect in Cancer Immunotherapy and Targeted Therapy

Han, Y., Yuan, Y., Cao, S., Li, M. & Zang, Y., Jul 1 2020, In : Statistics in Biosciences. 12, 2, p. 180-195 16 p.

Research output: Contribution to journalArticle

1 Scopus citations

QUBIC2: A novel and robust biclustering algorithm for analyses and interpretation of large-scale RNA-Seq data

Xie, J., Ma, A., Zhang, Y., Liu, B., Cao, S., Wang, C., Xu, J., Zhang, C. & Ma, Q., Feb 15 2020, In : Bioinformatics. 36, 4, p. 1143-1149 7 p.

Research output: Contribution to journalArticle

1 Scopus citations
2019

A Bayesian adaptive marker-stratified design for molecularly targeted agents with customized hierarchical modeling

Zang, Y., Guo, B., Han, Y., Cao, S. & Zhang, C., Jul 10 2019, In : Statistics in Medicine. 38, 15, p. 2883-2896 14 p.

Research output: Contribution to journalArticle

LTMG: a novel statistical modeling of transcriptional expression states in single-cell RNA-Seq data

Wan, C., Chang, W., Zhang, Y., Shah, F., Lu, X., Zang, Y., Zhang, A., Cao, S., Fishel, M. L., Ma, Q. & Zhang, C., Oct 10 2019, In : Nucleic acids research. 47, 18, p. e111

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

M3S: A comprehensive model selection for multi-modal single-cell RNA sequencing data

Zhang, Y., Wan, C., Wang, P., Chang, W., Huo, Y., Chen, J., Ma, Q., Cao, S. & Zhang, C., Dec 20 2019, In : BMC bioinformatics. 20, 672.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Robust tests for gene–environment interaction in case-control and case-only designs

Zang, Y., Fung, W. K., Cao, S., Ng, H. K. T. & Zhang, C., Jan 2019, In : Computational Statistics and Data Analysis. 129, p. 79-92 14 p.

Research output: Contribution to journalArticle

Statistical multiscale mapping of IDH1, MGMT, and microvascular proliferation in human brain tumors from multiparametric MR and spatially-registered core biopsy

Parker, J. G., Diller, E. E., Cao, S., Nelson, J. T., Yeom, K., Ho, C. & Lober, R., Dec 1 2019, In : Scientific reports. 9, 1, 17112.

Research output: Contribution to journalArticle

Open Access

Warburg Effects in Cancer and Normal Proliferating Cells: Two Tales of the Same Name

Sun, H., Chen, L., Cao, S., Liang, Y. & Xu, Y., Jun 2019, In : Genomics, Proteomics and Bioinformatics. 17, 3, p. 273-286 14 p.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations
2018

Fenton reactions drive nucleotide and ATP syntheses in cancer

Sun, H., Zhang, C., Cao, S., Sheng, T., Dong, N. & Xu, Y., Oct 1 2018, In : Journal of Molecular Cell Biology. 10, 5, p. 448-459 12 p.

Research output: Contribution to journalArticle

Open Access
9 Scopus citations

MRHCA: a nonparametric statistics based method for hub and co-expression module identification in large gene co-expression network

Zhang, Y., Cao, S., Zhao, J., Alsaihati, B., Ma, Q. & Zhang, C., Mar 1 2018, In : Quantitative Biology. 6, 1, p. 40-55 16 p.

Research output: Contribution to journalArticle

Open Access
2017

A novel unsupervised algorithm for biological process-based analysis on cancer

Song, T., Cao, S., Tao, S., Liang, S., Du, W. & Liang, Y., Dec 1 2017, In : Scientific reports. 7, 1, 4671.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Competition between DNA methylation, nucleotide synthesis, and antioxidation in cancer versus normal tissues

Cao, S., Zhu, X., Zhang, C., Qian, H., Schuttler, H. B., Gong, J. & Xu, Y., Aug 1 2017, In : Cancer Research. 77, 15, p. 4185-4195 11 p.

Research output: Contribution to journalArticle

Open Access
6 Scopus citations

The method for breast cancer grade prediction and pathway analysis based on improved multiple kernel learning

Song, T., Wang, Y., Du, W., Cao, S., Tian, Y. & Liang, Y., Feb 1 2017, In : Journal of bioinformatics and computational biology. 15, 1, 1650037.

Research output: Contribution to journalArticle

3 Scopus citations

Transcription regulation by DNA methylation under stressful conditions in human cancer

Cao, S., Zhou, Y., Wu, Y., Song, T., Alsaihati, B. & Xu, Y., Dec 1 2017, In : Quantitative Biology. 5, 4, p. 328-337 10 p.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations
2016

Amino acid transporter SLC6A14 is a novel and effective drug target for pancreatic cancer

Coothankandaswamy, V., Cao, S., Xu, Y., Prasad, P. D., Singh, P. K., Reynolds, C. P., Yang, S., Ogura, J., Ganapathy, V. & Bhutia, Y. D., Jan 1 2016, In : British Journal of Pharmacology. 173, 23, p. 3292-3306 15 p.

Research output: Contribution to journalArticle

Open Access
34 Scopus citations
2015

Analysis of strand-specific RNA-seq data using machine learning reveals the structures of transcription units in Clostridium thermocellum

Chou, W. C., Ma, Q., Yang, S., Cao, S., Klingeman, D. M., Brown, S. D. & Xu, Y., Feb 22 2015, In : Nucleic acids research. 43, 10, e67.

Research output: Contribution to journalArticle

Open Access
13 Scopus citations

Comprehensive characterization of the genomic alterations in human gastric cancer

Cui, J., Yin, Y., Ma, Q., Wang, G., Olman, V., Zhang, Y., Chou, W. C., Hong, C. S., Zhang, C., Cao, S., Mao, X., Li, Y., Qin, S., Zhao, S., Jiang, J., Hastings, P., Li, F. & Xu, Y., Jul 1 2015, In : International Journal of Cancer. 137, 1, p. 86-95 10 p.

Research output: Contribution to journalArticle

Open Access
27 Scopus citations

Elucidation of drivers of high-level production of lactates throughout a cancer development

Zhang, C., Liu, C., Cao, S. & Xu, Y., Jun 1 2015, In : Journal of Molecular Cell Biology. 7, 3, p. 267-279 13 p.

Research output: Contribution to journalArticle

5 Scopus citations
2014

Population dynamics inside cancer biomass driven by repeated hypoxia-reoxygenation cycles

Zhang, C., Cao, S. & Xu, Y., Sep 1 2014, In : Quantitative Biology. 2, 3, p. 85-99 15 p.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations