Find Publications

2019
1 Citation (Scopus)

Power calculation in stepped-wedge cluster randomized trial with reduced intervention sustainability effect

Li, J., Zhang, Y., Myers, L. J. & Bravata, D., Jan 1 2019, In : Journal of biopharmaceutical statistics. 29, 4, p. 663-674 12 p.

Research output: Contribution to journalArticle

Pragmatic Clinical Trials
Randomized Trial
Health Services Research
Sustainability
Random Allocation
5 Citations (Scopus)

PPAR-γ in macrophages limits pulmonary inflammation and promotes host recovery following respiratory viral infection

Huang, S., Zhu, B., Cheon, I. S., Goplen, N. P., Jiang, L., Zhang, R., Stokes Peebles, R., Mack, M., Kaplan, M., Limper, A. H. & Sun, J., May 1 2019, In : Journal of virology. 93, 9, e00030-19.

Research output: Contribution to journalArticle

Peroxisome Proliferator-Activated Receptors
Alveolar Macrophages
Virus Diseases
Respiratory Tract Infections
Pneumonia

Practical Wisdom and the Program Coordinator

Gunderman, R., Jan 1 2019, In : Academic Radiology.

Research output: Contribution to journalComment/debate

1 Citation (Scopus)
Polycomb Repressive Complex 2
Ectoderm
Embryonic Development
Intellectual Disability
Phenotype
2 Citations (Scopus)

Preanalytics and precision pathology: Pathology practices to ensure molecular integrity of cancer patient biospecimens for precision medicine

Compton, C. C., Robb, J. A., Anderson, M. W., Berry, A. B., Birdsong, G. G., Bloom, K. J., Branton, P. A., Crothers, J. W., Cushman-Vokoun, A. M., Hicks, D. G., Khoury, J. D., Laser, J., Marshall, C. B., Misialek, M. J., Natale, K. E., Nowak, J. A., Olson, D., Pfeifer, J. D., Schade, A., Vance, G. H. & 2 others, Walk, E. E. & Yohe, S. L., Jan 1 2019, In : Archives of Pathology and Laboratory Medicine. 143, 11, p. 1346-1363 18 p.

Research output: Contribution to journalReview article

Open Access
Precision Medicine
Pathology
Neoplasms
Translational Medical Research
Accreditation

Precision Medicine in Pancreatic Disease-Knowledge Gaps and Research Opportunities: Summary of a National Institute of Diabetes and Digestive and Kidney Diseases Workshop

Lowe, M. E., Andersen, D. K., Caprioli, R. M., Choudhary, J., Cruz-Monserrate, Z., Dasyam, A. K., Forsmark, C. E., Gorelick, F. S., Gray, J. W., Haupt, M., Kelly, K. A., Olive, K. P., Plevritis, S. K., Rappaport, N., Roth, H. R., Steen, H., Swamidass, S. J., Tirkes, T., Uc, A., Veselkov, K. & 2 others, Whitcomb, D. C. & Habtezion, A., Nov 1 2019, In : Pancreas. 48, 10, p. 1250-1258 9 p.

Research output: Contribution to journalArticle

National Institute of Diabetes and Digestive and Kidney Diseases (U.S.)
Pancreatic Diseases
Precision Medicine
Education
Research

Precision of the virtual occlusal record

Botsford, K. P., Frazier, M. C., Ghoneima, A. A. M., Utreja, A., Bhamidipalli, S. S. & Stewart, K., Sep 1 2019, In : The Angle orthodontist. 89, 5, p. 751-757 7 p.

Research output: Contribution to journalArticle

Open Access
Jaw Relation Record
Software
Bites and Stings
Canidae
Tooth
1 Citation (Scopus)

Preclinical insights into cholangiopathies: disease modeling and emerging therapeutic targets

Sato, K., Glaser, S., Kennedy, L., Liangpunsakul, S., Meng, F., Francis, H. & Alpini, G., Jun 3 2019, In : Expert Opinion on Therapeutic Targets. 23, 6, p. 461-472 12 p.

Research output: Contribution to journalReview article

Cholangitis
Biliary Atresia
Sclerosing Cholangitis
Liver
Therapeutics
8 Citations (Scopus)

Predicting Alzheimer’s disease progression using multi-modal deep learning approach

for Alzheimer’s Disease Neuroimaging Initiative, Dec 1 2019, In : Scientific Reports. 9, 1, 1952.

Research output: Contribution to journalArticle

Open Access
Disease Progression
Alzheimer Disease
Learning
Neuroimaging
Area Under Curve

Predicting biochemical recurrence after radical prostatectomy: the role of prognostic grade group and index tumor nodule

Vau, N., Henriques, V., Cheng, L., Blanca, A., Fonseca, J., Montironi, R., Cimadamore, A. & Lopez-Beltran, A., Nov 2019, In : Human pathology. 93, p. 6-15 10 p.

Research output: Contribution to journalArticle

Prostatectomy
Recurrence
Neoplasms
Survival
Prostate
2 Citations (Scopus)

Predicting Caries in Medical Settings: Risk Factors in Diverse Infant Groups

Fontana, M., Eckert, G. J., Keels, M. A., Jackson, R., Katz, B., Kemper, A. R., Levy, B. T., Levy, S. M., Yanca, E., Kelly, S., Daly, J. M., Patterson, B. & McKnight, P., Jan 1 2019, In : Journal of dental research. 98, 1, p. 68-76 9 p.

Research output: Contribution to journalArticle

Medicaid
Meals
Caregivers
Snacks
Mothers

Predicting outcomes in non-muscle invasive (Ta/T1) bladder cancer: the role of molecular grade based on luminal/basal phenotype

Rebola, J., Aguiar, P., Blanca, A., Montironi, R., Cimadamore, A., Cheng, L., Henriques, V., Lobato-Faria, P. & Lopez-Beltran, A., Jan 1 2019, In : Virchows Archiv.

Research output: Contribution to journalArticle

Urinary Bladder Neoplasms
Phenotype
Neoplasms
Urinary Bladder
Multivariate Analysis

Predicting progression of in situ carcinoma in the era of precision genomics

Cheng, M., Hanna, N., Davidson, D. & Gunderman, R., Jun 1 2019, In : Journal of Thoracic Disease. 11, 6, p. 517-525 9 p.

Research output: Contribution to journalReview article

Carcinoma in Situ
Genomics

Predicting risk for Alcohol Use Disorder using longitudinal data with multimodal biomarkers and family history: a machine learning study

Kinreich, S., Meyers, J. L., Maron-Katz, A., Kamarajan, C., Pandey, A. K., Chorlian, D. B., Zhang, J., Pandey, G., Subbie-Saenz de Viteri, S., Pitti, D., Anokhin, A. P., Bauer, L., Hesselbrock, V., Schuckit, M. A., Edenberg, H. J. & Porjesz, B., Jan 1 2019, (Accepted/In press) In : Molecular Psychiatry.

Research output: Contribution to journalArticle

Biomarkers
Alcohols
Single Nucleotide Polymorphism
African Americans
Electroencephalography
2 Citations (Scopus)

Predicting Short-term MCI-to-AD Progression Using Imaging, CSF, Genetic Factors, Cognitive Resilience, and Demographics

for the Alzheimer’s Disease Neuroimaging Initiative, Dec 1 2019, In : Scientific Reports. 9, 1, 2235.

Research output: Contribution to journalArticle

Open Access
Disease Progression
Alzheimer Disease
Demography
Complement C1
Prodromal Symptoms
7 Citations (Scopus)

Predicting the early risk of chronic kidney disease in patients with diabetes using real-world data

Ravizza, S., Huschto, T., Adamov, A., Böhm, L., Büsser, A., Flöther, F. F., Hinzmann, R., König, H., McAhren, S. M., Robertson, D. H., Schleyer, T., Schneidinger, B. & Petrich, W., Jan 1 2019, In : Nature Medicine. 25, 1, p. 57-59 3 p.

Research output: Contribution to journalArticle

Controlled Clinical Trials
Medical problems
Chronic Renal Insufficiency
Therapeutics
Clinical Studies

Predicting the results of RNA molecular specific hybridization using machine learning

Zhu, W., Liu, X., Xu, M. & Wu, H., Nov 2019, In : IEEE/CAA Journal of Automatica Sinica. 6, 6, p. 1384-1396 13 p., 8894749.

Research output: Contribution to journalArticle

RNA
Learning systems
Trees (mathematics)
Bioinformatics
Decision trees
Social Determinants of Health
Electronic Health Records
Area Under Curve
Hospital Emergency Service
Organizations

Prediction of Nephropathy in Type 2 Diabetes: An Analysis of the ACCORD Trial Applying Machine Learning Techniques

Rodriguez-Romero, V., Bergstrom, R. F., Decker, B., Lahu, G., Vakilynejad, M. & Bies, R., Jan 1 2019, In : Clinical and translational science.

Research output: Contribution to journalArticle

Open Access
Diabetic Nephropathies
Medical problems
Glomerular Filtration Rate
Type 2 Diabetes Mellitus
Learning systems

Predictive biomarkers for immunotherapy in the treatment of advanced urothelial carcinoma: Where we stand and where we go

Gevaert, T., Cimadamore, A., Eckstein, M., Scarpelli, M., Lopez-Beltran, A., Cheng, L. & Montironi, R., Jul 1 2019, In : Future Oncology. 15, 19, p. 2199-2202 4 p.

Research output: Contribution to journalReview article

Microbiota
Immunotherapy
Biomarkers
Lymphocytes
Carcinoma

Predictive modeling of hypoglycemia for clinical decision support in evaluating outpatients with diabetes mellitus

Li, X., Yu, S., Zhang, Z., Radican, L., Cummins, J., Engel, S. S., Iglay, K., Duke, J., Baker, J., Brodovicz, K. G., Naik, R. G., Leventhal, J., Chatterjee, A. K., Rajpathak, S. & Weiner, M., Nov 2 2019, In : Current Medical Research and Opinion. 35, 11, p. 1885-1891 7 p.

Research output: Contribution to journalArticle

Clinical Decision Support Systems
Hypoglycemia
Diabetes Mellitus
Outpatients
Natural Language Processing
1 Citation (Scopus)

Predictive utility of an adapted Marshall head CT classification scheme after traumatic brain injury

Brown, A. W., Pretz, C. R., Bell, K. R., Hammond, F., Arciniegas, D. B., Bodien, Y. G., Dams-O’Connor, K., Giacino, J. T., Hart, T., Johnson-Greene, D., Kowalski, R. G., Walker, W. C., Weintraub, A. & Zafonte, R., Jan 1 2019, (Accepted/In press) In : Brain Injury.

Research output: Contribution to journalArticle

Tomography
Rehabilitation
Wounds and Injuries
Inpatients
Hospitalization

Predictors of 1-Year Global Outcomes After Traumatic Brain Injury Among Older Adults: A NIDILRR Traumatic Brain Injury Model Systems Study

Hammond, F. M., Baker-Sparr, C. A., Dahdah, M. N., Dams-O’Connor, K., Dreer, L. E., O’Neil-Pirozzi, T. M. & Novack, T. A., Dec 1 2019, In : Journal of Aging and Health. 31, 10_suppl, p. 68S-96S

Research output: Contribution to journalArticle

system model
rehabilitation
brain
Glasgow Outcome Scale
Rehabilitation

Predictors of Nodal and Metastatic Failure in Early Stage Non–small-cell Lung Cancer After Stereotactic Body Radiation Therapy

Cerra-Franco, A., Liu, S., Azar, M., Shiue, K., Freije, S., Hinton, J., Deig, C. R., Edwards, D., Estabrook, N. C., Ellsworth, S. G., Huang, K., Diab, K., Langer, M., Zellars, R., Kong, F. M., Wan, J. & Lautenschlaeger, T., Jan 1 2019, (Accepted/In press) In : Clinical Lung Cancer.

Research output: Contribution to journalArticle

Non-Small Cell Lung Carcinoma
Radiotherapy
Neoplasm Metastasis
Tumor Burden
Lung

Predictors of orthodontic residency performance: An assessment of scholastic and demographic selection parameters

Grillo, A. C., Ghoneima, A. A. M., Garetto, L. P., Bhamidipalli, S. S. & Stewart, K., Jan 1 2019, In : Angle Orthodontist. 89, 3, p. 488-494 7 p.

Research output: Contribution to journalArticle

Open Access
Internship and Residency
Orthodontics
Educational Measurement
Demography
Dental Schools

Preface to Special Issue for Panos Macheras

Bies, R., Jan 1 2019, In : Journal of Pharmacokinetics and Pharmacodynamics.

Research output: Contribution to journalArticle

Open Access
tetrazepam

Preference elicitation: Obtaining gestural guidelines for PACS in neurosurgery

Madapana, N., Gonzalez, G., Taneja, R., Rodgers, R., Zhang, L. & Wachs, J., Oct 1 2019, In : International Journal of Medical Informatics. 130, 103934.

Research output: Contribution to journalArticle

Radiology Information Systems
Gestures
Neurosurgery
Guidelines
Operating Rooms
2 Citations (Scopus)

Preparation and use of a yeast shRNA delivery system for gene silencing in mosquito larvae

Mysore, K., Hapairai, L. K., Wei, N., Realey, J. S., Scheel, N. D., Severson, D. W. & Scheel, M., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 213-231 19 p. (Methods in Molecular Biology; vol. 1858).

Research output: Chapter in Book/Report/Conference proceedingChapter

Gene Silencing
Culicidae
Small Interfering RNA
Larva
Yeasts

Preparing next-generation scientists for biomedical big data: Artificial intelligence approaches

Moore, J. H., Boland, M. R., Camara, P. G., Chervitz, H., Gonzalez, G., Himes, B. E., Kim, D., Mowery, D. L., Ritchie, M. D., Shen, L., Urbanowicz, R. J. & Holmes, J. H., Jan 1 2019, In : Personalized Medicine. 16, 3, p. 247-257 11 p.

Research output: Contribution to journalReview article

Natural Language Processing
Precision Medicine
Electronic Health Records
Information Storage and Retrieval
Artificial Intelligence

Pretransplant HLA typing revealed loss of heterozygosity in the major histocompatibility complex in a patient with acute myeloid leukemia

Lobashevsky, A. L., Krueger-Sersen, M., Britton, R. M., Littrell, C. A., Singh, S., Cui, C. P., Kashi, Z., Martin, R. K., Breman, A. M., Vance, G. & Farag, S., Jan 1 2019, In : Human Immunology.

Research output: Contribution to journalArticle

Histocompatibility Testing
Loss of Heterozygosity
Major Histocompatibility Complex
Acute Myeloid Leukemia
Cheek
3 Citations (Scopus)

Pretreatment Psychoneurological Symptoms and Their Association With Longitudinal Cognitive Function and Quality of Life in Older Breast Cancer Survivors

Thinking and Living with Cancer (TLC) Study, Jan 1 2019, (Accepted/In press) In : Journal of Pain and Symptom Management.

Research output: Contribution to journalArticle

Cognition
Survivors
Quality of Life
Breast Neoplasms
Activities of Daily Living
2 Citations (Scopus)

Prevalence of Medical and Psychiatric Comorbidities Following Traumatic Brain Injury

Hammond, F., Corrigan, J. D., Ketchum, J. M., Malec, J. F., Dams-O'Connor, K., Hart, T., Novack, T. A., Bogner, J., Dahdah, M. N. & Whiteneck, G. G., Jan 1 2019, In : Journal of Head Trauma Rehabilitation.

Research output: Contribution to journalArticle

Psychiatry
Comorbidity
Odds Ratio
Panic Disorder
Back Pain
1 Citation (Scopus)

Prevalence of Potentially Clinically Significant Magnetic Resonance Imaging Findings in Athletes with and without Sport-Related Concussion

Klein, A. P., Tetzlaff, J. E., Bonis, J. M., Nelson, L. D., Mayer, A. R., Huber, D. L., Harezlak, J., Mathews, V., Ulmer, J. L., Sinson, G. P., Nencka, A. S., Koch, K. M., Wu, Y-C., Saykin, A., DiFiori, J. P., Giza, C. C., Goldman, J., Guskiewicz, K. M., Mihalik, J. P., Duma, S. M. & 6 others, Rowson, S., Brooks, A., Broglio, S. P., McAllister, T., McCrea, M. A. & Meier, T. B., Jun 1 2019, In : Journal of Neurotrauma. 36, 11, p. 1776-1785 10 p.

Research output: Contribution to journalArticle

Athletes
Sports
Magnetic Resonance Imaging
Odds Ratio
Wounds and Injuries

Prevalence of Romantic Experiences and Competencies Among 14 to 17 Year Olds: Implications for the Primary Care Setting

Beckmeyer, J. J., Herbenick, D., Fu, T. C., Dodge, B. & Fortenberry, J. D., Jan 1 2019, (Accepted/In press) In : Clinical Pediatrics.

Research output: Contribution to journalArticle

Primary Health Care
Reproductive Health
Health Behavior
Sexual Behavior
Demography

Preventing Alzheimer Disease by Deprescribing Anticholinergic Medications

Campbell, N. L., Holden, R. & Boustani, M., Jan 1 2019, In : JAMA Internal Medicine.

Research output: Contribution to journalComment/debate

Cholinergic Antagonists
Alzheimer Disease
Deprescriptions
Topical Fluorides
Toothpastes
Fluorides
Randomized Controlled Trials
Betula

Previous Implant Fractures: A New Descriptive Classification System

Egol, K. A., Carlock, K. D., Kelly, E. A., Seetharam, A., Mullis, B., Marcantonio, A. J., Bramlett, K. J., Nchako, C. M., Watson, J. T., Cannada, L. K. & Konda, S. R., Sep 1 2019, In : Journal of orthopaedic trauma. 33, 9, p. 423-427 5 p.

Research output: Contribution to journalArticle

Bone and Bones
Equipment and Supplies
Wounds and Injuries
Therapeutics
7 Citations (Scopus)

Primary ciliary dyskinesia: Longitudinal study of lung disease by ultrastructure defect and genotype

and the Genetic Disorders of Mucociliary Clearance Consortium, Jan 15 2019, In : American Journal of Respiratory and Critical Care Medicine. 199, 2, p. 190-198 9 p.

Research output: Contribution to journalArticle

Kartagener Syndrome
Dyneins
Lung Diseases
Longitudinal Studies
Genotype

Primary Human B Cells at Different Differentiation and Maturation Stages Exhibit Distinct Susceptibilities to Vaccinia Virus Binding and Infection

Shepherd, N., Lan, J., Li, W., Rane, S. & Yu, A., Oct 1 2019, In : Journal of virology. 93, 19

Research output: Contribution to journalArticle

Virus Attachment
Vaccinia virus
Virus Diseases
B-lymphocytes
B-Lymphocytes
1 Citation (Scopus)
Synovial Sarcoma
Kidney
Gene Rearrangement
Sarcoma

Prioritization of cognitive assessments in Alzheimer's disease via learning to rank using brain morphometric data

Peng, B., Yao, X., Risacher, S. L., Saykin, A. J., Shen, L. & Ning, X., May 2019, 2019 IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2019 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 8834618. (2019 IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2019 - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Biomarkers
Brain
Alzheimer Disease
Learning
Precision Medicine
3 Citations (Scopus)

Prioritization of Therapeutic Targets and Trial Design in Cirrhotic Portal Hypertension

Abraldes, J. G., Trebicka, J., Chalasani, N., D’Amico, G., Rockey, D. C., Shah, V. H., Bosch, J. & Garcia-Tsao, G., Mar 1 2019, In : Hepatology. 69, 3, p. 1287-1299 13 p.

Research output: Contribution to journalArticle

Portal Hypertension
Portal Pressure
Fibrosis
Therapeutics
Industry

Prioritizing Amyloid Imaging Biomarkers in Alzheimer’s Disease via Learning to Rank

for the ADNI, Jan 1 2019, Multimodal Brain Image Analysis and Mathematical Foundations of Computational Anatomy - 4th International Workshop, MBIA 2019, and 7th International Workshop, MFCA 2019, Held in Conjunction with MICCAI 2019, Proceedings. Zhu, D., Yan, J., Huang, H., Shen, L., Thompson, P. M., Westin, C-F., Pennec, X., Joshi, S., Nielsen, M., Sommer, S., Fletcher, T. & Durrleman, S. (eds.). Springer, p. 139-148 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11846 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Alzheimer's Disease
Biomarkers
Imaging
Imaging techniques
Paradigm

PRMTs and miRNAs: functional cooperation in cancer and beyond

Jin, J., Martin, M., Hartley, A. V. & Lu, T., Aug 3 2019, In : Cell Cycle. 18, 15, p. 1676-1686 11 p.

Research output: Contribution to journalReview article

Protein-Arginine N-Methyltransferases
MicroRNAs
Epigenomics
Neoplasms
Gene Expression

Probability of Bladder Augmentation, Diversion and Clean Intermittent Catheterization in Classic Bladder Exstrophy: A 36-Year, Multi-Institutional, Retrospective Cohort Study

Pediatric Urology Midwest Alliance (PUMA), Dec 1 2019, In : The Journal of urology. 202, 6, p. 1256-1262 7 p.

Research output: Contribution to journalArticle

Intermittent Urethral Catheterization
Bladder Exstrophy
Urinary Bladder
Cohort Studies
Retrospective Studies

Probiotic Therapy for Treating Behavioral and Gastrointestinal Symptoms in Autism Spectrum Disorder: A Systematic Review of Clinical Trials

Liu, J., Wan, G. B., Huang, M. S., Agyapong, G., Zou, T. L., Zhang, X. Y., Liu, Y. W., Song, Y., Tsai, Y. C. & Kong, X. J., Apr 1 2019, In : Current Medical Science. 39, 2, p. 173-184 12 p.

Research output: Contribution to journalArticle

Behavioral Symptoms
Probiotics
Clinical Trials
Therapeutics
Comorbidity

Procedural Complexity of TransCarotid Artery Revascularization Is Not Increased in Irradiated and Reoperative Necks

Wang, S. K., Miladore, J. N., Drucker, N. A., Fajardo, A., Lemmon, G., Dalsing, M., Murphy, M. & Motaganahalli, R., Jan 1 2019, (Accepted/In press) In : Annals of Vascular Surgery.

Research output: Contribution to journalArticle

Neck
Arteries
Cranial Nerve Injuries
Neck Dissection
Fluoroscopy
1 Citation (Scopus)

Processes of Care Associated with Risk of Mortality and Recurrent Stroke among Patients with Transient Ischemic Attack and Nonsevere Ischemic Stroke

Bravata, D., Myers, L. J., Reeves, M., Cheng, E. M., Baye, F., Ofner, S., Miech, E., Damush, T., Sico, J. J., Zillich, A., Phipps, M., Williams, L. S., Chaturvedi, S., Johanning, J., Yu, Z., Perkins, A. J., Zhang, Y. & Arling, G., Jul 5 2019, In : JAMA Network Open. 2, 7, e196716.

Research output: Contribution to journalArticle

Open Access
Transient Ischemic Attack
Stroke
Odds Ratio
Mortality
Hydroxymethylglutaryl-CoA Reductase Inhibitors

Productive cross-talk with the microenvironment: A critical step in ovarian cancer metastasis

El Aziz, M. A. A., Agarwal, K., Dasari, S. & Mitra, A. K., Oct 2019, In : Cancers. 11, 10, 1608.

Research output: Contribution to journalReview article

Open Access
Ovarian Neoplasms
Tumor Microenvironment
Neoplasm Metastasis
Cellular Microenvironment
Neoplasms

Profiling molecular regulators of recurrence in chemorefractory triple-negative breast cancers

Hancock, B. A., Chen, Y. H., Solzak, J. P., Ahmad, M. N., Wedge, D. C., Brinza, D., Scafe, C., Veitch, J., Gottimukkala, R., Short, W., Atale, R. V., Ivan, M., Badve, S., Schneider, B., Lu, X., Miller, K. & Radovich, M., Aug 5 2019, In : Breast Cancer Research. 21, 1, 87.

Research output: Contribution to journalArticle

Open Access
Triple Negative Breast Neoplasms
Recurrence
Drug Therapy
Residual Neoplasm
Mutation