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Author

  • A. Dunker
2016

Prostate-associated gene 4 (PAGE4), an intrinsically disordered cancer/testis antigen, is a novel therapeutic target for prostate cancer

Kulkarni, P., Dunker, A. K., Weninger, K. & Orban, J., Sep 2016, In : Asian Journal of Andrology. 18, 5, p. 695-703 9 p.

Research output: Contribution to journalReview article

10 Scopus citations
2015

Back to the future: Nuclear magnetic resonance and bioinformatics studies on intrinsically disordered proteins

Dunker, A. & Oldfield, C. J., Sep 19 2015, Intrinsically Disordered Proteins Studied by NMR Spectroscopy. Springer International Publishing, p. 1-34 34 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Scopus citations
2012

Sweeping away protein aggregation with entropic bristles: Intrinsically disordered protein fusions enhance soluble expression

Santner, A. A., Croy, C. H., Vasanwala, F. H., Uversky, V. N., Van, Y. Y. J. & Dunker, A. K., Sep 18 2012, In : Biochemistry. 51, 37, p. 7250-7262 13 p.

Research output: Contribution to journalArticle

58 Scopus citations
2011

Phosphorylation of human calsequestrin: Implications for calcium regulation

Sanchez, E. J., Munske, G. R., Criswell, A., Milting, H., Dunker, A. K. & Kang, C., Jul 2011, In : Molecular and Cellular Biochemistry. 353, 1-2, p. 195-204 10 p.

Research output: Contribution to journalArticle

12 Scopus citations
2017

Comparing NMR and X-ray protein structure: Lindemann-like parameters and NMR disorder

Faraggi, E., Dunker, A., Sussman, J. L. & Kloczkowski, A., Aug 8 2017, (Accepted/In press) In : Journal of Biomolecular Structure and Dynamics. p. 1-11 11 p.

Research output: Contribution to journalArticle

3 Scopus citations
2011

The orderly chaos of proteins.

Dunker, A. K. & Kriwacki, R. W., Apr 1 2011, In : Scientific American. 304, 4, p. 68-73 6 p.

Research output: Contribution to journalArticle

5 Scopus citations
2012

Protein intrinsic disorder and induced pluripotent stem cells

Xue, B., Oldfield, C. J., Van, Y. Y., Dunker, A. K. & Uversky, V. N., Jan 1 2012, In : Molecular BioSystems. 8, 1, p. 134-150 17 p.

Research output: Contribution to journalReview article

24 Scopus citations

Intrinsically disordered proteins

Uversky, V. N. & Dunker, A. K., Dec 1 2012, Comprehensive Biophysics. Elsevier Inc., Vol. 3. p. 170-211 42 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2015

Erratum to: A new hydropathy scale that improves disorder prediction, [BMC Bioinformatics, 15(Suppl 17) (2014), 54]

Huang, F., Oldfield, C. J., Xue, B., Hsu, W. L., Meng, J., Liu, X., Shen, L., Romero, P., Uversky, V. N. & Dunker, A. K., Jul 31 2015, In : BMC bioinformatics. 16, 1, 241.

Research output: Contribution to journalComment/debate

2016

Pacific Symposium on Biocomputing 2016

Altman, R. B., Dunker, A. K., Hunter, L., Klein, T. E. & Ritchie, M. D., Jan 1 2016, In : Pacific Symposium on Biocomputing. p. vi-vii

Research output: Contribution to journalEditorial

2012

Binding promiscuity of unfolded peptides

Oldfield, C. J., Xue, B., Dunker, A. K. & Uversky, V. N., Feb 22 2012, Protein and Peptide Folding, Misfolding, and Non-Folding. John Wiley and Sons, p. 239-277 39 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2011

Evolution and disorder

Brown, C. J., Johnson, A. K., Dunker, A. K. & Daughdrill, G. W., Jun 1 2011, In : Current Opinion in Structural Biology. 21, 3, p. 441-446 6 p.

Research output: Contribution to journalReview article

154 Scopus citations
2014

Intrinsically disordered proteins and intrinsically disordered protein regions

Oldfield, C. J. & Dunker, A. K., Jun 2014, In : Annual Review of Biochemistry. 83, p. 553-584 32 p.

Research output: Contribution to journalArticle

380 Scopus citations

The number of cell types, information content, and the evolution of complex multicellularity

Niklas, K. J., Cobb, E. D. & Dunker, A. K., Jan 1 2014, In : Acta Societatis Botanicorum Poloniae. 83, 4, p. 337-347 11 p.

Research output: Contribution to journalArticle

10 Scopus citations
2011

In-silico prediction of disorder content using hybrid sequence representation

Mizianty, M. J., Zhang, T., Xue, B., Zhou, Y., Dunker, A. K., Uversky, V. N. & Kurgan, L., Jun 17 2011, In : BMC bioinformatics. 12, 245.

Research output: Contribution to journalArticle

31 Scopus citations
2013

Utilization of protein intrinsic disorder knowledge in structural proteomics

Oldfield, C. J., Xue, B., Van, Y. Y., Ulrich, E. L., Markley, J. L., Dunker, A. K. & Uversky, V. N., Feb 1 2013, In : Biochimica et Biophysica Acta - Proteins and Proteomics. 1834, 2, p. 487-498 12 p.

Research output: Contribution to journalArticle

34 Scopus citations
2016

Molecular recognition features (MoRFs) in three domains of life

Yan, J., Dunker, A. K., Uversky, V. N. & Kurgan, L., Mar 1 2016, In : Molecular BioSystems. 12, 3, p. 697-710 14 p.

Research output: Contribution to journalArticle

56 Scopus citations
2015

Intrinsic disorder mediates hepatitis C virus core-host cell protein interactions

Dolan, P. T., Roth, A. P., Xue, B., Sun, R., Dunker, A. K., Uversky, V. N. & Lacount, D. J., Feb 1 2015, In : Protein Science. 24, 2, p. 221-235 15 p.

Research output: Contribution to journalArticle

28 Scopus citations
2018

Intrinsically Disordered Proteins Link Alternative Splicing and Post-translational Modifications to Complex Cell Signaling and Regulation

Zhou, J., Zhao, S. & Dunker, A. K., Aug 3 2018, In : Journal of molecular biology. 430, 16, p. 2342-2359 18 p.

Research output: Contribution to journalArticle

20 Scopus citations
2017

Time, space, and disorder in the expanding proteome universe

Minde, D. P., Dunker, A. K. & Lilley, K. S., Apr 1 2017, In : Proteomics. 17, 7, 1600399.

Research output: Contribution to journalArticle

11 Scopus citations
2020

Nipah shell disorder, modes of infection, and virulence

Goh, G. K. M., Dunker, A. K., Foster, J. A. & Uversky, V. N., Apr 2020, In : Microbial Pathogenesis. 141, 103976.

Research output: Contribution to journalArticle

4 Scopus citations

Shell disorder analysis predicts greater resilience of the SARS-CoV-2 (COVID-19) outside the body and in body fluids

Goh, G. K. M., Dunker, A. K., Foster, J. A. & Uversky, V. N., Jul 2020, In : Microbial Pathogenesis. 144, 104177.

Research output: Contribution to journalArticle

Open Access
6 Scopus citations
2012

The roles of intrinsic disorder in orchestrating the wnt-pathway

Xue, B., Dunker, A. K. & Uversky, V. N., Apr 2012, In : Journal of Biomolecular Structure and Dynamics. 29, 5, p. 843-861 19 p.

Research output: Contribution to journalArticle

31 Scopus citations

Molecular profiling - An essential technology enabling personalized medicine in breast cancer

Liu, J., Li, S., Dunker, A. K. & Uversky, V. N., Apr 1 2012, In : Current Drug Targets. 13, 4, p. 541-554 14 p.

Research output: Contribution to journalArticle

5 Scopus citations
2011

Predictive power estimation algorithm (PPEA) - a new algorithm to reduce overfitting for genomic biomarker discovery

Liu, J., Jolly, R. A., Smith, A. T., Searfoss, G. H., Goldstein, K. M., Uversky, V. N., Dunker, K., Li, S., Thomas, C. E. & Wei, T., Sep 15 2011, In : PloS one. 6, 9, e24233.

Research output: Contribution to journalArticle

7 Scopus citations

Regions of intrinsic disorder help identify a novel nuclear localization signal in Toxoplasma gondii histone acetyltransferase TgGCN5-B

Dixon, S. E., Bhatti, M. M., Uversky, V. N., Dunker, A. K. & Sullivan, W. J., Feb 1 2011, In : Molecular and Biochemical Parasitology. 175, 2, p. 192-195 4 p.

Research output: Contribution to journalArticle

14 Scopus citations
2019

Intrinsically disordered domains: Sequence ➔ disorder ➔ function relationships

Zhou, J., Oldfield, C. J., Yan, W., Shen, B. & Dunker, A. K., 2019, In : Protein Science. 28, 9, p. 1652-1663 12 p.

Research output: Contribution to journalArticle

3 Scopus citations
2011

Erratum: (Biophysical Journal)

Morales, C., Oldfield, C. J., Hsu, W. L., Huang, F., Meng, J., Wagle, M. R., Rehlander, R. J., Williams, R. W., Peyetti, S., Xia, Y., Obradovic, Z., Uversky, V. N. & Keith Dunker, A., May 4 2011, In : Biophysical journal. 100, 9, 1 p.

Research output: Contribution to journalComment/debate

2020

Many-to-one binding by intrinsically disordered protein regions

Alterovitz, W. L., Faraggi, E., Oldfield, C. J., Meng, J., Xue, B., Huang, F., Romero, P., Kloczkowski, A., Uversky, V. N. & Dunker, A. K., Jan 1 2020, In : Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 25, p. 159-170 12 p.

Research output: Contribution to journalArticle

2013

An assignment of intrinsically disordered regions of proteins based on NMR structures

Ota, M., Koike, R., Amemiya, T., Tenno, T., Romero, P. R., Hiroaki, H., Dunker, A. K. & Fukuchi, S., Jan 2013, In : Journal of Structural Biology. 181, 1, p. 29-36 8 p.

Research output: Contribution to journalArticle

16 Scopus citations
2014

Classification of intrinsically disordered regions and proteins

Van Der Lee, R., Buljan, M., Lang, B., Weatheritt, R. J., Daughdrill, G. W., Dunker, A. K., Fuxreiter, M., Gough, J., Gsponer, J., Jones, D. T., Kim, P. M., Kriwacki, R. W., Oldfield, C. J., Pappu, R. V., Tompa, P., Uversky, V. N., Wright, P. E. & Babu, M. M., Jul 9 2014, In : Chemical Reviews. 114, 13, p. 6589-6631 43 p.

Research output: Contribution to journalReview article

720 Scopus citations
2013

Intrinsically disordered regions of p53 family are highly diversified in evolution

Xue, B., Brown, C. J., Dunker, A. K. & Uversky, V. N., Apr 2013, In : Biochimica et Biophysica Acta - Proteins and Proteomics. 1834, 4, p. 725-738 14 p.

Research output: Contribution to journalArticle

43 Scopus citations
2011

Changes in predicted protein disorder tendency may contribute to disease risk

Hu, Y., Liu, Y., Jung, J., Dunker, A. K. & Wang, Y., Dec 23 2011, In : BMC genomics. 12, SUPPL. 5, S2.

Research output: Contribution to journalArticle

9 Scopus citations

Structural Disorder in Matrix Proteins of HIV-Related Viruses

Goh, G. K. M., Xue, B., Dunker, A. K. & Uversky, V. N., Oct 24 2011, Flexible Viruses: Structural Disorder in Viral Proteins. John Wiley and Sons, p. 143-167 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2020

Identification of Intrinsic Disorder in Complexes from the Protein Data Bank

Zhou, J., Oldfield, C. J., Yan, W., Shen, B. & Dunker, A. K., Jul 28 2020, In : ACS Omega. 5, 29, p. 17883-17891 9 p.

Research output: Contribution to journalArticle

Open Access
2019

Pacific symposium on biocomputing 2019

Altman, R. B., Dunker, A. K., Hunter, L., Ritchie, M. D. & Klein, T. E., 2019, In : Pacific Symposium on Biocomputing. 24, 2019, p. v-vi

Research output: Contribution to journalEditorial

2012

Erratum: A protein domain-based interactome network for C. elegans early embryogenesis (Cell (2008) 134 (534-545))

Boxem, M., Maliga, Z., Klitgord, N., Li, N., Lemmens, I., Mana, M., De Lichtervelde, L., Mul, J. D., Van De Peut, D., Devos, M., Simonis, N., Yildirim, M. A., Cokol, M., Kao, H. L., De Smet, A. S., Wang, H., Schlaitz, A. L., Hao, T., Milstein, S., Fan, C. & 17 others, Tipsword, M., Drew, K., Galli, M., Rhrissorrakrai, K., Drechsel, D., Koller, D., Roth, F. P., Iakoucheva, L. M., Dunker, A. K., Bonneau, R., Gunsalus, K. C., Hill, D. E., Piano, F., Tavernier, J., Van Den Heuvel, S., Hyman, A. A. & Vidal, M., Dec 21 2012, In : Cell. 151, 7, p. 1633 1 p.

Research output: Contribution to journalComment/debate

2 Scopus citations
2014

Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms

Yang, J. Y., Dunker, A. K., Liu, J. S., Qin, X., Arabnia, H. R., Yang, W., Niemierko, A., Chen, Z., Luo, Z., Wang, L., Liu, Y., Xu, D., Deng, Y., Tong, W. & Yang, M. Q., Dec 16 2014, In : BMC bioinformatics. 15, 17, I1.

Research output: Contribution to journalEditorial

8 Scopus citations

Identification of genes and pathways involved in kidney renal clear cell carcinoma

Yang, W., Yoshigoe, K., Qin, X., Liu, J. S., Yang, J. Y., Niemierko, A., Deng, Y., Liu, Y., Dunker, A. K., Chen, Z., Wang, L., Xu, D., Arabnia, H. R., Tong, W. & Yang, M. Q., Dec 16 2014, In : BMC bioinformatics. 15, 17, S2.

Research output: Contribution to journalArticle

35 Scopus citations

The emerging genomics and systems biology research lead to systems genomics studies

Yang, M. Q., Yoshigoe, K., Yang, W., Tong, W., Qin, X., Keith Dunker, A., Chen, Z., Arbania, H. R., Liu, J. S., Niemierko, A. & Yang, J. Y., 2014, In : BMC genomics. 15, I1.

Research output: Contribution to journalComment/debate

3 Scopus citations
2012

Preface

Uversky, V. N. & Dunker, A., 2012, In : Methods in molecular biology (Clifton, N.J.). 895

Research output: Contribution to journalArticle

2011

Erratum: (Biophysical Journal)

Huang, F., Oldfield, C. J., Bin, X., Meng, J., Hsu, W., Uversky, V. N. & Keith Dunker, A., May 4 2011, In : Biophysical journal. 100, 9, 1 p.

Research output: Contribution to journalComment/debate

A functionally required unfoldome from the plant kingdom: Intrinsically disordered N-terminal domains of GRAS proteins are involved in molecular recognition during plant development

Sun, X., Xue, B., Jones, W. T., Rikkerink, E., Dunker, A. K. & Uversky, V. N., Oct 1 2011, In : Plant Molecular Biology. 77, 3, p. 205-223 19 p.

Research output: Contribution to journalArticle

78 Scopus citations

Erratum: (Biophysical Journal)

Hsu, W. L., Oldfield, C. J., Xue, B., Wagle, M., Meng, J., Huang, F., Morales, C., Uversky, V. N. & Keith Dunker, A., May 4 2011, In : Biophysical journal. 100, 9, 1 p.

Research output: Contribution to journalComment/debate

2012

Uncertainty analysis in protein disorder prediction

Ghalwash, M. F., Dunker, A. K. & Obradović, Z., Jan 1 2012, In : Molecular BioSystems. 8, 1, p. 381-391 11 p.

Research output: Contribution to journalArticle

8 Scopus citations
2011

The orderly chaos of proteins

Keith Dunker, A. & Kriwacki, R. W., Apr 1 2011, In : Scientific American. 304, 4, p. 48-53 6 p.

Research output: Contribution to journalArticle

7 Scopus citations
2016

Pacific Symposium on Biocomputing 2016

Altman, R. B., Dunker, A., Hunter, L., Klein, T. E. & Ritchie, M. D., 2016, In : Pacific Symposium on Biocomputing 2016, PSB 2016. p. vi-vii

Research output: Contribution to journalEditorial

2011

Abundance and functional roles of intrinsic disorder in allergenic proteins and allergen representative peptides

Xue, B., Soeria-Atmadja, D., Gustafsson, M. G., Hammerling, U., Dunker, A. K. & Uversky, V. N., Sep 1 2011, In : Proteins: Structure, Function and Bioinformatics. 79, 9, p. 2595-2606 12 p.

Research output: Contribution to journalArticle

5 Scopus citations
2013

Sequences and topology: Disorder, modularity, and post/pre translation modification

Gough, J. & Dunker, A. K., Jun 1 2013, In : Current Opinion in Structural Biology. 23, 3, p. 417-419 3 p.

Research output: Contribution to journalEditorial

4 Scopus citations

Exploring the binding diversity of intrinsically disordered proteins involved in one-to-many binding

Hsu, W. L., Oldfield, C. J., Xue, B., Meng, J., Huang, F., Romero, P., Uversky, V. N. & Dunker, A. K., Mar 1 2013, In : Protein Science. 22, 3, p. 258-273 16 p.

Research output: Contribution to journalArticle

110 Scopus citations