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2017
39 Citations (Scopus)

Simultaneous quantification of protein order and disorder

Sormanni, P., Piovesan, D., Heller, G. T., Bonomi, M., Kukic, P., Camilloni, C., Fuxreiter, M., Dosztanyi, Z., Pappu, R. V., Babu, M. M., Longhi, S., Tompa, P., Dunker, A., Uversky, V. N., Tosatto, S. C. E. & Vendruscolo, M., Mar 22 2017, In : Nature Chemical Biology. 13, 4, p. 339-342 4 p.

Research output: Contribution to journalComment/debate

2016
8 Citations (Scopus)

Correlating: Flavivirus virulence and levels of intrinsic disorder in shell proteins: Protective roles vs. immune evasion

Goh, G. K. M., Dunker, A. & Uversky, V. N., 2016, In : Molecular BioSystems. 12, 6, p. 1881-1891 11 p.

Research output: Contribution to journalArticle

Immune Evasion
Flavivirus
Virulence
Protein C
Tick-Borne Encephalitis Viruses
2018
18 Citations (Scopus)
Intrinsically Disordered Proteins
Alternative Splicing
Post Translational Protein Processing
Inosine Diphosphate
NFATC Transcription Factors
2019
2 Citations (Scopus)

HIV Vaccine Mystery and Viral Shell Disorder

Goh, G. K. M., Dunker, A., Foster, J. A. & Uversky, V. N., May 8 2019, In : Biomolecules. 9, 5

Research output: Contribution to journalReview article

Open Access
Viral Vaccines
Viruses
Vaccines
HIV
Simplexvirus
3 Citations (Scopus)

Intrinsically disordered domains: Sequence ➔ disorder ➔ function relationships

Zhou, J., Oldfield, C. J., Yan, W., Shen, B. & Dunker, A., Jan 1 2019, In : Protein Science. 28, 9, p. 1652-1663 12 p.

Research output: Contribution to journalArticle

Conserved Sequence
Seed
Molecular recognition
Seeds
Bioinformatics
2016

Pacific Symposium on Biocomputing 2016

Altman, R. B., Dunker, A., Hunter, L., Klein, T. E. & Ritchie, M. D., 2016, In : Pacific Symposium on Biocomputing 2016, PSB 2016. p. vi-vii

Research output: Contribution to journalEditorial

2018
1 Citation (Scopus)

Evolution of protein ductility in duplicated genes of plants

Yruela, I., Contreras-Moreira, B., Dunker, A. & Niklas, K. J., Aug 20 2018, In : Frontiers in Plant Science. 9, 1216.

Research output: Contribution to journalArticle

algae
genes
proteins
chromosomes
genetic recombination
2017
8 Citations (Scopus)

Time, space, and disorder in the expanding proteome universe

Minde, D. P., Dunker, A. K. & Lilley, K. S., Apr 1 2017, In : Proteomics. 17, 7, 1600399.

Research output: Contribution to journalArticle

Proteome
Proteins
Structural dynamics
Biomolecules
Conformations
2016
10 Citations (Scopus)

Prostate-associated gene 4 (PAGE4), an intrinsically disordered cancer/testis antigen, is a novel therapeutic target for prostate cancer

Kulkarni, P., Dunker, A., Weninger, K. & Orban, J., Sep 1 2016, In : Asian Journal of Andrology. 18, 5, p. 695-703 9 p.

Research output: Contribution to journalReview article

Testicular Neoplasms
Prostate
Prostatic Neoplasms
Antigens
Genes

Pacific Symposium on Biocomputing 2016

Altman, R. B., Dunker, A., Hunter, L., Klein, T. E. & Ritchie, M. D., Jan 1 2016, In : Pacific Symposium on Biocomputing. p. vi-vii

Research output: Contribution to journalEditorial

2017
9 Citations (Scopus)

Evidence for a strong correlation between transcription factor protein disorder and organismic complexity

Yruela, I., Oldfield, C. J., Niklas, K. J. & Dunker, A., 2017, In : Genome Biology and Evolution. 9, 5, p. 1248-1265 18 p.

Research output: Contribution to journalArticle

Transcription Factors
transcription factors
protein
Cell Count
algae
2018
13 Citations (Scopus)

The evolutionary origins of cell type diversification and the role of intrinsically disordered proteins

Niklas, K. J., Dunker, A. & Yruela, I., Mar 24 2018, In : Journal of Experimental Botany. 69, 7, p. 1437-1446 10 p.

Research output: Contribution to journalReview article

Intrinsically Disordered Proteins
proteins
Alternative Splicing
cells
alternative splicing

Pacific Symposium on Biocomputing 2018

Altman, R. B., Dunker, A., Hunter, L., Ritchie, M. D. & Klein, T. E., Jan 1 2018, In : Pacific Symposium on Biocomputing, 2018. 212669, p. vii-ix

Research output: Contribution to journalEditorial

2019

Entropy, fluctuations, and disordered proteins

Faraggi, E., Dunker, A., Jernigan, R. L. & Kloczkowski, A., Jan 1 2019, In : Entropy. 21, 8, 764.

Research output: Contribution to journalArticle

Open Access
disorders
entropy
proteins
dihedral angle
mutations
2017
2 Citations (Scopus)

Comparing NMR and X-ray protein structure: Lindemann-like parameters and NMR disorder

Faraggi, E., Dunker, A., Sussman, J. L. & Kloczkowski, A., Aug 8 2017, (Accepted/In press) In : Journal of Biomolecular Structure and Dynamics. p. 1-11 11 p.

Research output: Contribution to journalArticle

X-Rays
Proteins
2016
2 Citations (Scopus)

Lipopolysaccharide treatment induces genome-wide pre-mRNA splicing pattern changes in mouse bone marrow stromal stem cells

Zhou, A., Li, M., He, B., Feng, W., Huang, F., Xu, B., Dunker, A. K., Balch, C., Li, B., Liu, Y. & Wang, Y., Aug 22 2016, In : BMC genomics. 17, 509.

Research output: Contribution to journalArticle

RNA Precursors
Mesenchymal Stromal Cells
Lipopolysaccharides
Stem Cells
Genome
44 Citations (Scopus)

Molecular recognition features (MoRFs) in three domains of life

Yan, J., Dunker, A., Uversky, V. N. & Kurgan, L., Mar 1 2016, In : Molecular BioSystems. 12, 3, p. 697-710 14 p.

Research output: Contribution to journalArticle

Eukaryota
Proteins
Archaea
Intrinsically Disordered Proteins
Bacteria
2017
3 Citations (Scopus)

Sequence fingerprints distinguish erroneous from correct predictions of intrinsically disordered protein regions

Saravanan, K. M., Dunker, A. & Krishnaswamy, S., Dec 28 2017, (Accepted/In press) In : Journal of Biomolecular Structure and Dynamics. p. 1-14 14 p.

Research output: Contribution to journalArticle

Intrinsically Disordered Proteins
Dermatoglyphics
Amino Acids
Asparagine
Amino Acid Sequence
2019
1 Citation (Scopus)

Zika and flavivirus shell disorder: Virulence and fetal morbidity

Kian-Meng Goh, G., Dunker, A. K., Foster, J. A. & Uversky, V. N., Nov 2019, In : Biomolecules. 9, 11, 710.

Research output: Contribution to journalArticle

Open Access
Flavivirus
Viruses
Virulence
Morbidity
Protein C
2020

Many-to-one binding by intrinsically disordered protein regions

Alterovitz, W. L., Faraggi, E., Oldfield, C. J., Meng, J., Xue, B., Huang, F., Romero, P., Kloczkowski, A., Uversky, V. N. & Dunker, A. K., Jan 1 2020, In : Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 25, p. 159-170 12 p.

Research output: Contribution to journalArticle

Intrinsically Disordered Proteins
Inosine Diphosphate
Proteins
Binding Sites
Binding sites

Nipah shell disorder, modes of infection, and virulence

Goh, G. K. M., Dunker, A. K., Foster, J. A. & Uversky, V. N., Apr 2020, In : Microbial Pathogenesis. 141, 103976.

Research output: Contribution to journalArticle

Disease Outbreaks
Virulence
Nipah Virus
Malaysia
Viruses
2018
1 Citation (Scopus)

Regulating Protein Function by Delayed Folding

Zhou, J. & Dunker, A., May 1 2018, In : Structure. 26, 5, p. 679-681 3 p.

Research output: Contribution to journalShort survey

Protein Sorting Signals
Computational Biology
Hydrophobic and Hydrophilic Interactions
Proteins
2017
8 Citations (Scopus)

Corrigendum: DisProt 7.0: a major update of the database of disordered proteins

Piovesan, D., Tabaro, F., Mičetić, I., Necci, M., Quaglia, F., Oldfield, C. J., Aspromonte, M. C., Davey, N. E., Davidović, R., Dosztányi, Z., Elofsson, A., Gasparini, A., Hatos, A., Kajava, A. V., Kalmar, L., Leonardi, E., Lazar, T., Macedo-Ribeiro, S., Macossay-Castillo, M., Meszaros, A. & 20 others, Minervini, G., Murvai, N., Pujols, J., Roche, D. B., Salladini, E., Schad, E., Schramm, A., Szabo, B., Tantos, A., Tonello, F., Tsirigos, K. D., Veljković, N., Ventura, S., Vranken, W., Warholm, P., Uversky, V. N., Dunker, A. K., Longhi, S., Tompa, P. & Tosatto, S. C. E., Jan 4 2017, In : Nucleic acids research. 45, D1, p. D1123-D1124

Research output: Contribution to journalComment/debate

Open Access
80 Citations (Scopus)

DisProt 7.0: A major update of the database of disordered proteins

Piovesan, D., Tabaro, F., Mičetić, I., Necci, M., Quaglia, F., Oldfield, C. J., Aspromonte, M. C., Davey, N. E., Davidović, R., Dosztányi, Z., Elofsson, A., Gasparini, A., Hatos, A., Kajava, A. V., Kalmar, L., Leonardi, E., Lazar, T., Macedo-Ribeiro, S., Macossay-Castillo, M., Meszaros, A. & 20 others, Minervini, G., Murvai, N., Pujols, J., Roche, D. B., Salladini, E., Schad, E., Schramm, A., Szabo, B., Tantos, A., Tonello, F., Tsirigos, K. D., Veljković, N., Ventura, S., Vranken, W., Warholm, P., Uversky, V. N., Dunker, A., Longhi, S., Tompa, P. & Tosatto, S. C. E., Jan 1 2017, In : Nucleic Acids Research. 45, D1, p. D219-D227

Research output: Contribution to journalArticle

Inosine Diphosphate
Protein Databases
Intrinsically Disordered Proteins
X Ray Crystallography
Proteins