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  • A. Dunker
Article

Comparing NMR and X-ray protein structure: Lindemann-like parameters and NMR disorder

Faraggi, E., Dunker, A., Sussman, J. L. & Kloczkowski, A., Aug 8 2017, (Accepted/In press) In : Journal of Biomolecular Structure and Dynamics. p. 1-11 11 p.

Research output: Contribution to journalArticle

3 Scopus citations

Correlating: Flavivirus virulence and levels of intrinsic disorder in shell proteins: Protective roles vs. immune evasion

Goh, G. K. M., Dunker, A. K. & Uversky, V. N., 2016, In : Molecular BioSystems. 12, 6, p. 1881-1891 11 p.

Research output: Contribution to journalArticle

13 Scopus citations

DisProt: Intrinsic protein disorder annotation in 2020

Hatos, A., Hajdu-Soltész, B., Monzon, A. M., Palopoli, N., Álvarez, L., Aykac-Fas, B., Bassot, C., Benítez, G. I., Bevilacqua, M., Chasapi, A., Chemes, L., Davey, N. E., Davidović, R., Dunker, A. K., Elofsson, A., Gobeill, J., Foutel, N. S. G., Sudha, G., Guharoy, M., Horvath, T. & 44 others, Iglesias, V., Kajava, A. V., Kovacs, O. P., Lamb, J., Lambrughi, M., Lazar, T., Leclercq, J. Y., Leonardi, E., MacEdo-Ribeiro, S., MacOssay-Castillo, M., Maiani, E., Manso, J. A., Marino-Buslje, C., Martínez-Pérez, E., Mészáros, B., Mičetić, I., Minervini, G., Murvai, N., Necci, M., Ouzounis, C. A., Pajkos, M., Paladin, L., Pancsa, R., Papaleo, E., Parisi, G., Pasche, E., Barbosa Pereira, P. J., Promponas, V. J., Pujols, J., Quaglia, F., Ruch, P., Salvatore, M., Schad, E., Szabo, B., Szaniszló, T., Tamana, S., Tantos, A., Veljkovic, N., Ventura, S., Vranken, W., Dosztányi, Z., Tompa, P., Tosatto, S. C. E. & Piovesan, D., Jan 1 2020, In : Nucleic acids research. 48, D1, p. D269-D276

Research output: Contribution to journalArticle

Open Access
8 Scopus citations

DisProt 7.0: A major update of the database of disordered proteins

Piovesan, D., Tabaro, F., Mičetić, I., Necci, M., Quaglia, F., Oldfield, C. J., Aspromonte, M. C., Davey, N. E., Davidović, R., Dosztányi, Z., Elofsson, A., Gasparini, A., Hatos, A., Kajava, A. V., Kalmar, L., Leonardi, E., Lazar, T., Macedo-Ribeiro, S., Macossay-Castillo, M., Meszaros, A. & 20 others, Minervini, G., Murvai, N., Pujols, J., Roche, D. B., Salladini, E., Schad, E., Schramm, A., Szabo, B., Tantos, A., Tonello, F., Tsirigos, K. D., Veljković, N., Ventura, S., Vranken, W., Warholm, P., Uversky, V. N., Dunker, A. K., Longhi, S., Tompa, P. & Tosatto, S. C. E., Jan 1 2017, In : Nucleic acids research. 45, D1, p. D219-D227

Research output: Contribution to journalArticle

103 Scopus citations

Entropy, fluctuations, and disordered proteins

Faraggi, E., Dunker, A. K., Jernigan, R. L. & Kloczkowski, A., 2019, In : Entropy. 21, 8, 764.

Research output: Contribution to journalArticle

Open Access

Evidence for a strong correlation between transcription factor protein disorder and organismic complexity

Yruela, I., Oldfield, C. J., Niklas, K. J. & Dunker, A. K., Jan 1 2017, In : Genome Biology and Evolution. 9, 5, p. 1248-1265 18 p.

Research output: Contribution to journalArticle

12 Scopus citations

Evolution of protein ductility in duplicated genes of plants

Yruela, I., Contreras-Moreira, B., Dunker, A. K. & Niklas, K. J., Aug 20 2018, In : Frontiers in Plant Science. 9, 1216.

Research output: Contribution to journalArticle

3 Scopus citations

Hiv vaccine mystery and viral shell disorder

Goh, G. K. M., Dunker, A. K., Foster, J. A. & Uversky, V. N., May 2019, In : Biomolecules. 9, 5, 178.

Research output: Contribution to journalArticle

Open Access
9 Scopus citations

Identification of Intrinsic Disorder in Complexes from the Protein Data Bank

Zhou, J., Oldfield, C. J., Yan, W., Shen, B. & Dunker, A. K., Jul 28 2020, In : ACS Omega. 5, 29, p. 17883-17891 9 p.

Research output: Contribution to journalArticle

Open Access

Intrinsically disordered domains: Sequence ➔ disorder ➔ function relationships

Zhou, J., Oldfield, C. J., Yan, W., Shen, B. & Dunker, A. K., 2019, In : Protein Science. 28, 9, p. 1652-1663 12 p.

Research output: Contribution to journalArticle

3 Scopus citations

Intrinsically Disordered Proteins Link Alternative Splicing and Post-translational Modifications to Complex Cell Signaling and Regulation

Zhou, J., Zhao, S. & Dunker, A. K., Aug 3 2018, In : Journal of molecular biology. 430, 16, p. 2342-2359 18 p.

Research output: Contribution to journalArticle

20 Scopus citations

Lipopolysaccharide treatment induces genome-wide pre-mRNA splicing pattern changes in mouse bone marrow stromal stem cells

Zhou, A., Li, M., He, B., Feng, W., Huang, F., Xu, B., Dunker, A. K., Balch, C., Li, B., Liu, Y. & Wang, Y., Aug 22 2016, In : BMC genomics. 17, 509.

Research output: Contribution to journalArticle

3 Scopus citations

Many-to-one binding by intrinsically disordered protein regions

Alterovitz, W. L., Faraggi, E., Oldfield, C. J., Meng, J., Xue, B., Huang, F., Romero, P., Kloczkowski, A., Uversky, V. N. & Dunker, A. K., Jan 1 2020, In : Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 25, p. 159-170 12 p.

Research output: Contribution to journalArticle

Molecular recognition features (MoRFs) in three domains of life

Yan, J., Dunker, A. K., Uversky, V. N. & Kurgan, L., Mar 1 2016, In : Molecular BioSystems. 12, 3, p. 697-710 14 p.

Research output: Contribution to journalArticle

56 Scopus citations

Nipah shell disorder, modes of infection, and virulence

Goh, G. K. M., Dunker, A. K., Foster, J. A. & Uversky, V. N., Apr 2020, In : Microbial Pathogenesis. 141, 103976.

Research output: Contribution to journalArticle

4 Scopus citations

Sequence fingerprints distinguish erroneous from correct predictions of intrinsically disordered protein regions

Saravanan, K. M., Dunker, A. K. & Krishnaswamy, S., Dec 10 2018, In : Journal of Biomolecular Structure and Dynamics. 36, 16, p. 4338-4351 14 p.

Research output: Contribution to journalArticle

4 Scopus citations

Shell disorder analysis predicts greater resilience of the SARS-CoV-2 (COVID-19) outside the body and in body fluids

Goh, G. K. M., Dunker, A. K., Foster, J. A. & Uversky, V. N., Jul 2020, In : Microbial Pathogenesis. 144, 104177.

Research output: Contribution to journalArticle

Open Access
6 Scopus citations

Time, space, and disorder in the expanding proteome universe

Minde, D. P., Dunker, A. K. & Lilley, K. S., Apr 1 2017, In : Proteomics. 17, 7, 1600399.

Research output: Contribution to journalArticle

11 Scopus citations

Zika and flavivirus shell disorder: Virulence and fetal morbidity

Kian-Meng Goh, G., Dunker, A. K., Foster, J. A. & Uversky, V. N., Nov 2019, In : Biomolecules. 9, 11, 710.

Research output: Contribution to journalArticle

Open Access
6 Scopus citations
Chapter

Computational prediction of intrinsic disorder in protein sequences with the disCoP meta-predictor

Oldfield, C. J., Fan, X., Wang, C., Dunker, A. K. & Kurgan, L., 2020, Methods in Molecular Biology. Humana Press Inc., p. 21-35 15 p. (Methods in Molecular Biology; vol. 2141).

Research output: Chapter in Book/Report/Conference proceedingChapter

Comment/debate

Corrigendum: DisProt 7.0: a major update of the database of disordered proteins

Piovesan, D., Tabaro, F., Mičetić, I., Necci, M., Quaglia, F., Oldfield, C. J., Aspromonte, M. C., Davey, N. E., Davidović, R., Dosztányi, Z., Elofsson, A., Gasparini, A., Hatos, A., Kajava, A. V., Kalmar, L., Leonardi, E., Lazar, T., Macedo-Ribeiro, S., Macossay-Castillo, M., Meszaros, A. & 20 others, Minervini, G., Murvai, N., Pujols, J., Roche, D. B., Salladini, E., Schad, E., Schramm, A., Szabo, B., Tantos, A., Tonello, F., Tsirigos, K. D., Veljković, N., Ventura, S., Vranken, W., Warholm, P., Uversky, V. N., Dunker, A. K., Longhi, S., Tompa, P. & Tosatto, S. C. E., Jan 4 2017, In : Nucleic acids research. 45, D1, p. D1123-D1124

Research output: Contribution to journalComment/debate

Open Access
14 Scopus citations

Simultaneous quantification of protein order and disorder

Sormanni, P., Piovesan, D., Heller, G. T., Bonomi, M., Kukic, P., Camilloni, C., Fuxreiter, M., Dosztanyi, Z., Pappu, R. V., Babu, M. M., Longhi, S., Tompa, P., Dunker, A. K., Uversky, V. N., Tosatto, S. C. E. & Vendruscolo, M., Mar 22 2017, In : Nature chemical biology. 13, 4, p. 339-342 4 p.

Research output: Contribution to journalComment/debate

46 Scopus citations
Conference article

On the importance of computational biology and bioinformatics to the origins and rapid progression of the intrinsically disordered proteins field

Kurgan, L., Radivojac, P., Sussman, J. L. & Keith Dunker, A., 2020, In : Pacific Symposium on Biocomputing. 25, 2020, p. 149-158 10 p.

Research output: Contribution to journalConference article

Editorial

Pacific Symposium on Biocomputing 2016

Altman, R. B., Dunker, A., Hunter, L., Klein, T. E. & Ritchie, M. D., 2016, In : Pacific Symposium on Biocomputing 2016, PSB 2016. p. vi-vii

Research output: Contribution to journalEditorial

Pacific Symposium on Biocomputing 2016

Altman, R. B., Dunker, A. K., Hunter, L., Klein, T. E. & Ritchie, M. D., Jan 1 2016, In : Pacific Symposium on Biocomputing. p. vi-vii

Research output: Contribution to journalEditorial

Pacific Symposium on Biocomputing 2018

Altman, R. B., Dunker, A. K., Hunter, L., Ritchie, M. D. & Klein, T. E., Jan 1 2018, In : Pacific Symposium on Biocomputing. 0, 212669, p. vii-ix

Research output: Contribution to journalEditorial

Pacific symposium on biocomputing 2019

Altman, R. B., Dunker, A. K., Hunter, L., Ritchie, M. D. & Klein, T. E., 2019, In : Pacific Symposium on Biocomputing. 24, 2019, p. v-vi

Research output: Contribution to journalEditorial

Pacific symposium on biocomputing 2020

Altman, R. B., Keith Dunker, A., Hunter, L., Ritchie, M. D. & Klein, T. E., 2020, In : Pacific Symposium on Biocomputing. 25, 2020, p. vii-x

Research output: Contribution to journalEditorial

Rigidity of the outer shell predicted by a protein intrinsic disorder model sheds light on the COVID-19 (Wuhan-2019-nCoV) infectivity

Goh, G. K. M., Keith Dunker, A., Foster, J. A. & Uversky, V. N., Feb 2020, In : Biomolecules. 10, 2, 331.

Research output: Contribution to journalEditorial

Open Access
Review article

Prostate-associated gene 4 (PAGE4), an intrinsically disordered cancer/testis antigen, is a novel therapeutic target for prostate cancer

Kulkarni, P., Dunker, A. K., Weninger, K. & Orban, J., Sep 2016, In : Asian Journal of Andrology. 18, 5, p. 695-703 9 p.

Research output: Contribution to journalReview article

10 Scopus citations

The evolutionary origins of cell type diversification and the role of intrinsically disordered proteins

Niklas, K. J., Dunker, A. K. & Yruela, I., Mar 24 2018, In : Journal of Experimental Botany. 69, 7, p. 1437-1446 10 p.

Research output: Contribution to journalReview article

15 Scopus citations
Short survey

Regulating Protein Function by Delayed Folding

Zhou, J. & Dunker, A. K., May 1 2018, In : Structure. 26, 5, p. 679-681 3 p.

Research output: Contribution to journalShort survey

4 Scopus citations