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Three dimensional fluorescence microscopy image synthesis and segmentation

Fu, C., Lee, S., Ho, D. J., Han, S., Salama, P., Dunn, K. & Delp, E. J., Dec 13 2018, Proceedings - 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops, CVPRW 2018. IEEE Computer Society, Vol. 2018-June. p. 2302-2310 9 p. 8575470

Research output: Chapter in Book/Report/Conference proceedingConference contribution

13 Scopus citations

Three-dimensional imaging and quantitative analysis in CLARITY processed breast cancer tissues

Chen, Y., Shen, Q., White, S. L., Gokmen-Polar, Y., Badve, S. & Goodman, L. J., Dec 1 2019, In : Scientific reports. 9, 1, 5624.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Three Dimensional Nuclei Segmentation and Classification of Fluorescence Microscopy Images

Han, S., Lee, S., Chen, A., Yang, C., Salama, P., Dunn, K. W. & Delp, E. J., Apr 2020, ISBI 2020 - 2020 IEEE International Symposium on Biomedical Imaging. IEEE Computer Society, p. 526-530 5 p. 9098560. (Proceedings - International Symposium on Biomedical Imaging; vol. 2020-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Three-Dimensional Retinal Organoids Facilitate the Investigation of Retinal Ganglion Cell Development, Organization and Neurite Outgrowth from Human Pluripotent Stem Cells

Fligor, C. M., Langer, K. B., Sridhar, A., Ren, Y., Shields, P. K., Edler, M. C., Ohlemacher, S. K., Sluch, V. M., Zack, D. J., Zhang, C., Suter, D. M. & Meyer, J. S., Dec 1 2018, In : Scientific reports. 8, 1, 14520.

Research output: Contribution to journalArticle

Open Access
20 Scopus citations

Three-year observation of children 12 to 35 months old with untreated intermittent exotropia

the Pediatric Eye Disease Investigator Group, Mar 1 2020, In : Ophthalmic and Physiological Optics. 40, 2, p. 202-215 14 p.

Research output: Contribution to journalArticle

Three-Year Observation of Children 3 to 10 Years of Age with Untreated Intermittent Exotropia

The Pediatric Eye Disease Investigator Group, Sep 2019, In : Ophthalmology. 126, 9, p. 1249-1260 12 p.

Research output: Contribution to journalArticle

6 Scopus citations

Three year survival among patients with aids-related Kaposi sarcoma treated with chemotherapy and combination antiretroviral therapy at Moi teaching and referral hospital, Kenya

Busakhala, N., Kigen, G., Waako, P., Strother, R. M., Chite, F. & Loehrer, P., Sep 10 2019, In : Infectious Agents and Cancer. 14, 1, 24.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Tick-Borne Viruses of North America

Relich, R. F. & Grabowski, J. M., May 15 2020, In : Clinical Microbiology Newsletter. 42, 10, p. 79-86 8 p.

Research output: Contribution to journalArticle

Tidal breathing measurements at discharge and clinical outcomes in extremely low gestational age neonates

Ren, C. L., Feng, R., Davis, S. D., Eichenwald, E., Jobe, A., Moore, P. E., Panitch, H. B., Sharp, J. K., Kisling, J., Clem, C. & Kemp, J. S., Nov 2018, In : Annals of the American Thoracic Society. 15, 11, p. 1311-1319 9 p.

Research output: Contribution to journalArticle

7 Scopus citations

Tie-2/Angiopoietin pathway modulation as a therapeutic strategy for retinal disease

Hussain, R. M., Neiweem, A. E., Kansara, V., Harris, A. & Ciulla, T. A., Oct 3 2019, In : Expert Opinion on Investigational Drugs. 28, 10, p. 861-869 9 p.

Research output: Contribution to journalReview article

5 Scopus citations

Time course of rapid bone loss and cortical porosity formation observed by longitudinal μCT in a rat model of CKD

McNerny, E. M. B., Buening, D. T., Aref, M. W., Chen, N. X., Moe, S. M. & Allen, M. R., Aug 2019, In : Bone. 125, p. 16-24 9 p.

Research output: Contribution to journalArticle

6 Scopus citations

Time interval to biochemical failure as a surrogate end point in locally advanced prostate cancer: Analysis of randomized trial NRG/ RTOG 9202

Dignam, J. J., Hamstra, D. A., Lepor, H., Grignon, D., Brereton, H., Currey, A., Rosenthal, S., Zeitzer, K. L., Venkatesan, V. M., Horwitz, E. M., Pisansky, T. M. & Sandler, H. M., Jan 20 2019, In : Journal of Clinical Oncology. 37, 3, p. 213-221 9 p.

Research output: Contribution to journalArticle

3 Scopus citations

Time-resolved analysis of amino acid stress identifies eIF2 phosphorylation as necessary to inhibit mTORC1 activity in liver

Nikonorova, I. A., Mirek, E. T., Signore, C. C., Goudie, M. P., Wek, R. C. & Anthony, T. G., Apr 6 2018, In : Journal of Biological Chemistry. 293, 14, p. 5005-5015 11 p.

Research output: Contribution to journalArticle

10 Scopus citations

Time Sequence Evaluation of Biliary Stent Occlusion by Dissection Analysis of Retrieved Stents

Kwon, C. I., Gromski, M. A., Sherman, S., Easler, J. J., El Hajj, I. I., Watkins, J., Fogel, E., McHenry, L. & Lehman, G., May 6 2016, (Accepted/In press) In : Digestive Diseases and Sciences. p. 1-10 10 p.

Research output: Contribution to journalArticle

5 Scopus citations

Time spent outside of target glucose range for young children with type 1 diabetes: a continuous glucose monitor study

DiMeglio, L. A., Kanapka, L. G., DeSalvo, D. J., Anderson, B. J., Harrington, K. R., Hilliard, M. E., Laffel, L. M., Tamborlane, W. V., Van Name, M. A., Wadwa, R. P., Willi, S. M., Woerner, S., Wong, J. C. & Miller, K. M., Aug 1 2020, In : Diabetic Medicine. 37, 8, p. 1308-1315 8 p.

Research output: Contribution to journalArticle

Time to First-Line ART Failure and Time to Second-Line ART Switch in the IeDEA Pediatric Cohort

Wools-Kaloustian, K., Marete, I., Ayaya, S., Sohn, A. H., Van Nguyen, L., Li, S., Leroy, V., Musick, B. S., Newman, J. E., Edmonds, A., Davies, M. A., Eboua, F. T., Obama, M. T., Yotebieng, M., Sawry, S., Mofenson, L. M. & Yiannoutsos, C. T., Jun 1 2018, In : Journal of acquired immune deficiency syndromes (1999). 78, 2, p. 221-230 10 p.

Research output: Contribution to journalArticle

5 Scopus citations
Open Access
1 Scopus citations

Time trends of delirium rates in the intensive care unit

Khan, S. H., Lindroth, H., Hendrie, K., Wang, S., Imran, S., Perkins, A. J., Gao, S., Vahidy, F. S., Boustani, M. & Khan, B. A., Sep 1 2020, In : Heart and Lung. 49, 5, p. 572-577 6 p.

Research output: Contribution to journalArticle

1 Scopus citations

Ting-Kai Li: In Memoriam

Hesselbrock, V. M., Hesselbrock, M., Pfefferbaum, A., Sullivan, E. V. & Edenberg, H. J., Feb 1 2019, In : Alcoholism, clinical and experimental research. 43, 2, p. 202-203 2 p.

Research output: Contribution to journalArticle

Tip110/SART3 regulates IL-8 expression and predicts the clinical outcomes in melanoma

Timani, K. A., Gyorffy, B., Liu, Y., Mohammad, K. S. & He, J. J., Aug 17 2018, In : Molecular Cancer. 17, 1, 124.

Research output: Contribution to journalLetter

4 Scopus citations
Open Access

Tissue damage volume predicts organ dysfunction and inflammation after injury

Frantz, T. L., Steenburg, S. D., Gaski, G. E., Zarzaur, B. L., Bell, T. M., McCarroll, T. & McKinley, T. O., May 1 2016, In : Journal of Surgical Research. 202, 1, p. 188-195 8 p.

Research output: Contribution to journalArticle

5 Scopus citations

Tissue oxidative metabolism can increase the difference between local temperature and arterial blood temperature by up to 1.3oC: Implications for brain, brown adipose tissue, and muscle physiology

Zaretsky, D. V., Romanovsky, A. A., Zaretskaia, M. V. & Molkov, Y. I., Jan 2 2018, In : Temperature. 5, 1, p. 22-35 14 p.

Research output: Contribution to journalReview article

Open Access
7 Scopus citations

Tissue regeneration using endothelial colony-forming cells: Promising cells for vascular repair

Banno, K. & Yoder, M., Jan 1 2018, In : Pediatric Research. 83, 1-2, p. 283-290 8 p.

Research output: Contribution to journalReview article

26 Scopus citations

Tissue-Resident Macrophages Limit Pulmonary CD8 Resident Memory T Cell Establishment

Goplen, N. P., Huang, S., Zhu, B., Cheon, I. S., Son, Y. M., Wang, Z., Li, C., Dai, Q., Jiang, L. & Sun, J., Oct 10 2019, In : Frontiers in immunology. 10, 2332.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Tissue-specific Co-expression of Long Non-coding and Coding RNAs Associated with Breast Cancer

Wu, W., Wagner, E. K., Hao, Y., Rao, X., Dai, H., Han, J., Chen, J., Storniolo, A. M. V., Liu, Y. & He, C., Sep 6 2016, In : Scientific reports. 6, 32731.

Research output: Contribution to journalArticle

16 Scopus citations

Tissue tranglutaminase regulates interactions between ovarian cancer stem cells and the tumor niche

Condello, S., Sima, L., Ivan, C., Cardenas, H., Schiltz, G., Mishra, R. K. & Matei, D., Jun 1 2018, In : Cancer Research. 78, 11, p. 2990-3001 12 p.

Research output: Contribution to journalArticle

12 Scopus citations

Tissue Transglutaminase Activates Cancer-Associated Fibroblasts and Contributes to Gemcitabine Resistance in Pancreatic Cancer

Lee, J., Yakubov, B., Ivan, C., Jones, D. R., Caperell-Grant, A., Fishel, M., Cardenas, H. & Matei, D., Jan 1 2016, In : Neoplasia (United States). 18, 11, p. 689-698 10 p.

Research output: Contribution to journalArticle

11 Scopus citations

Titer estimation for quality control (TEQC) method: A practical approach for optimal production of protein complexes using the baculovirus expression vector system

Imasaki, T., Wenzel, S., Yamada, K., Bryant, M. L. & Takagi, Y., Apr 2018, In : PloS one. 13, 4, e0195356.

Research output: Contribution to journalArticle

5 Scopus citations

TLR3 deficiency exacerbates the loss of epithelial barrier function during genital tract Chlamydia muridarum infection

Kumar, R., Gong, H., Liu, L., Ramos-Solis, N., Seye, C. I. & Derbigny, W. A., Jan 2019, In : PloS one. 14, 1, e0207422.

Research output: Contribution to journalArticle

1 Scopus citations

Tobacco dependence education A survey of US and Canadian dental schools

Davis, J. M., Arnett, M. R., Loewen, J., Romito, L. & Gordon, S. C., Jun 1 2016, In : Journal of the American Dental Association. 147, 6, p. 405-412 8 p.

Research output: Contribution to journalArticle

9 Scopus citations

Tobramycin Serum Concentrations in Tracheostomy-Dependent Children Receiving Inhaled Tobramycin

Hughes, K. M., Cristea, A. I. & Tillman, E. M., Jun 2020, In : Pediatric, Allergy, Immunology, and Pulmonology. 33, 2, p. 92-95 4 p.

Research output: Contribution to journalArticle

To Eat or Not to Eat: A Commentary on Eating Issues That Affect Home Parenteral Nutrition and Home Enteral Nutrition Consumers

Tillman, E. & Ireton-Jones, C., Apr 1 2016, In : Nutrition in Clinical Practice. 31, 2, p. 155-157 3 p.

Research output: Contribution to journalReview article

1 Scopus citations

To edit or not to edit: Regulation of ADAR editing specificity and efficiency

Deffit, S. N. & Hundley, H., Jan 1 2016, In : Wiley Interdisciplinary Reviews: RNA. 7, 1, p. 113-127 15 p.

Research output: Contribution to journalArticle

35 Scopus citations

To Infuse or Ingest in Human Laboratory Alcohol Research

Cyders, M. A., Plawecki, M. H., Corbin, W., King, A., McCarthy, D. M., Ramchandani, V. A., Weafer, J. & O'Connor, S. J., Apr 1 2020, In : Alcoholism: Clinical and Experimental Research. 44, 4, p. 764-776 13 p.

Research output: Contribution to journalReview article

Toll-like receptor 3 (TLR3) promotes the resolution of chlamydia muridarum genital tract infection in congenic C57BL/6N mice

Carrasco, S. E., Hu, S., Imai, D. M., Kumar, R., Sandusky, G. E., Frank Yang, X. & Derbigny, W. A., Apr 2018, In : PloS one. 13, 4, e0195165.

Research output: Contribution to journalArticle

7 Scopus citations

Toll-like receptor 3 deficiency leads to altered immune responses to chlamydia trachomatis infection in human oviduct epithelial cells

Xu, J. Z., Kumar, R., Gong, H., Liu, L., Ramos-Solis, N., Li, Y. & Derbigny, W. A., Oct 1 2019, In : Infection and immunity. 87, 10, e00483-19.

Research output: Contribution to journalArticle

Toll-Like Receptors Induce Signal-Specific Reprogramming of the Macrophage Lipidome

Hsieh, W. Y., Zhou, Q. D., York, A. G., Williams, K. J., Scumpia, P. O., Kronenberger, E. B., Hoi, X. P., Su, B., Chi, X., Bui, V. L., Khialeeva, E., Kaplan, A., Son, Y. M., Divakaruni, A. S., Sun, J., Smale, S. T., Flavell, R. A. & Bensinger, S. J., Jul 7 2020, In : Cell Metabolism. 32, 1, p. 128-143.e5

Research output: Contribution to journalArticle

1 Scopus citations

Tonic pupil after botulinum toxin-A injection for treatment of esotropia in children

Pediatric Eye Disease Investigator Group, Feb 1 2016, In : Journal of AAPOS. 20, 1, p. 78-81 4 p.

Research output: Contribution to journalArticle

6 Scopus citations

Tools to assess behavioral and social science competencies in medical education: A systematic review

Carney, P. A., Palmer, R. T., Fuqua Miller, M., Thayer, E. K., Estroff, S. E., Litzelman, D. K., Biagioli, F. E., Teal, C. R., Lambros, A., Hatt, W. J. & Satterfield, J. M., May 1 2016, In : Academic Medicine. 91, 5, p. 730-742 13 p.

Research output: Contribution to journalReview article

19 Scopus citations

Too Many Don’ts and Not Enough Do’s? A Survey of Hospitals About Their Portal Instructions for Patients

Lee, J. L., Williams, C. E., Baird, S., Matthias, M. S. & Weiner, M., Apr 1 2020, In : Journal of general internal medicine. 35, 4, p. 1029-1034 6 p.

Research output: Contribution to journalArticle

1 Scopus citations

Toothbrush bristle configuration and brushing load: Effect on the development of simulated non-carious cervical lesions

Turssi, C. P., Kelly, A. B. & Hara, A. T., Jul 2019, In : Journal of Dentistry. 86, p. 75-80 6 p.

Research output: Contribution to journalArticle

1 Scopus citations

Toothbrushing abrasion susceptibility of enamel and dentin bleached with calcium-supplemented hydrogen peroxide gel

Borges, A. B., Santos, L. F. T. F., Augusto, M. G., Bonfiette, D., Hara, A. T. & Torres, C. R. G., Jun 1 2016, In : Journal of Dentistry. 49, p. 54-59 6 p.

Research output: Contribution to journalArticle

7 Scopus citations

Tooth-loss experience and associated variables among adult Mexicans 60 years and older

Islas-Granillo, H., Borges-Yañez, A., Medina-Solis, C. E., Lucas-Rincón, S. E., Navarrete-Hernández, J. D. J., Villalobos-Rodelo, J. J., Casanova-Rosado, J. F. & Maupomé, G., Jun 2016, In : Puerto Rico health sciences journal. 35, 2, p. 88-92 5 p.

Research output: Contribution to journalArticle

9 Scopus citations

Toothpaste factors related to dentine tubule occlusion and dentine protection against erosion and abrasion

João-Souza, S. H., Sakae, L. O., Lussi, A., Aranha, A. C. C., Hara, A., Baumann, T., Scaramucci, T. & Carvalho, T. S., Jun 1 2020, In : Clinical oral investigations. 24, 6, p. 2051-2060 10 p.

Research output: Contribution to journalArticle

Toothpastes and enamel erosion/abrasion – Impact of active ingredients and the particulate fraction

Ganss, C., Marten, J., Hara, A. & Schlueter, N., Jan 1 2016, In : Journal of Dentistry. 54, p. 62-67 6 p.

Research output: Contribution to journalArticle

15 Scopus citations

Topical ferumoxytol nanoparticles disrupt biofilms and prevent tooth decay in vivo via intrinsic catalytic activity

Liu, Y., Naha, P. C., Hwang, G., Kim, D., Huang, Y., Simon-Soro, A., Jung, H. I., Ren, Z., Li, Y., Gubara, S., Alawi, F., Zero, D., Hara, A. T., Cormode, D. P. & Koo, H., Dec 1 2018, In : Nature communications. 9, 1, 2920.

Research output: Contribution to journalArticle

33 Scopus citations

Topical glucocorticoid vs. diet therapy in eosinophilic esophagitis: the need for better treatment options

Imam, T. & Gupta, S. K., Aug 2 2016, In : Expert Review of Clinical Immunology. 12, 8, p. 797-799 3 p.

Research output: Contribution to journalEditorial

3 Scopus citations

Topical review: Building competency: Professional skills for pediatric psychologists in integrated primary care settings

Hoffses, K. W., Ramirez, L. Y., Berdan, L., Tunick, R., Honaker, S. M., Meadows, T. J., Shaffer, L., Robins, P. M., Sturm, L. & Stancin, T., Jan 1 2016, In : Journal of pediatric psychology. 41, 10, p. 1144-1160 17 p.

Research output: Contribution to journalReview article

15 Scopus citations