Convergent functional genomics: A Bayesian candidate gene identification approach for complex disorders

B. Bertsch, C. A. Ogden, K. Sidhu, H. Le-Niculescu, R. Kuczenski, A. B. Niculescu

Research output: Contribution to journalArticle

32 Citations (Scopus)

Abstract

Identifying genes involved in complex neuropsychiatric disorders through classic human genetic approaches has proven difficult. To overcome that barrier, we have developed a translational approach called Convergent Functional Genomics (CFG), which cross-matches animal model microarray gene expression data with human genetic linkage data as well as human postmortem brain data and biological role data, as a Bayesian way of cross-validating findings and reducing uncertainty. Our approach produces a short list of high probability candidate genes out of the hundreds of genes changed in microarray datasets and the hundreds of genes present in a linkage peak chromosomal area. These genes can then be prioritized, pursued, and validated in an individual fashion using: (1) human candidate gene association studies and (2) cell culture and mouse transgenic models. Further bioinformatics analysis of groups of genes identified through CFG leads to insights into pathways and mechanisms that may be involved in the pathophysiology of the illness studied. This simple but powerful approach is likely generalizable to other complex, non-neuropsychiatric disorders, for which good animal models, as well as good human genetic linkage datasets and human target tissue gene expression datasets exist.

Original languageEnglish (US)
Pages (from-to)274-279
Number of pages6
JournalMethods
Volume37
Issue number3
DOIs
StatePublished - Nov 1 2005

Fingerprint

Genetic Association Studies
Genomics
Genes
Medical Genetics
Genetic Linkage
Microarrays
Gene expression
Animal Models
Animals
Gene Expression
Computational Biology
Transgenic Mice
Uncertainty
Bioinformatics
Cell culture
Cell Culture Techniques
Brain
Association reactions
Tissue
Datasets

Keywords

  • Animal models
  • Bayesian
  • Candidate genes
  • Convergent functional genomics
  • Gene expression
  • Human genetics

ASJC Scopus subject areas

  • Molecular Biology

Cite this

Convergent functional genomics : A Bayesian candidate gene identification approach for complex disorders. / Bertsch, B.; Ogden, C. A.; Sidhu, K.; Le-Niculescu, H.; Kuczenski, R.; Niculescu, A. B.

In: Methods, Vol. 37, No. 3, 01.11.2005, p. 274-279.

Research output: Contribution to journalArticle

Bertsch, B. ; Ogden, C. A. ; Sidhu, K. ; Le-Niculescu, H. ; Kuczenski, R. ; Niculescu, A. B. / Convergent functional genomics : A Bayesian candidate gene identification approach for complex disorders. In: Methods. 2005 ; Vol. 37, No. 3. pp. 274-279.
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