Distinct ligand preferences of Src homology 3 domains from Src, Yes, Abl, Cortactin, p53bp2, PLCγ, Crk, and Grb2

Andrew B. Sparks, James E. Rider, Noah G. Hoffman, Dana M. Fowlkes, Lawrence Quilliam, Brian K. Kay

Research output: Contribution to journalArticle

318 Citations (Scopus)

Abstract

Src homology 3 (SH3) domains are conserved protein modules 50-70 amino acids long found in a variety of proteins with important roles in signal transduction. These domains have been shown to mediate protein-protein interactions by binding short proline-rich regions in ligand proteins. However, the ligand preferences of most SH3 domains and the role of these preferences in regulating SH3-mediated protein-protein interactions remain poorly defined. We have used a phage-displayed library of peptides of the form X6PXXPX6 to identify ligands for eight different SH3 domains. Using this approach, we have determined that each SH3 domain prefers peptide ligands with distinct sequence characteristics. Specifically, we have found that the Src SH3 domain selects peptides sharing the consensus motif LXXRPLPXΨP, whereas Yes SH3 selects ΨXXRPLPXLP, Abl SH3 selects PPXΘXPPPΨP, Cortactin SH3 selects +PPΨPXKPXWL, p53bp2 SH3 selects RPXΨPΨR+SXP, PLCγ SH3 selects PPVPPRPXXTL, Crk N-terminal SH3 selects ΨPΨLPΨK, and Grb2 N-terminal SH3 selects +ΘDXPLPXLP (where Ψ, Θ, and + represent aliphatic, aromatic, and basic residues, respectively). Furthermore, we have compared the binding of phage expressing peptides related to each consensus motif to a panel of 12 SH3 domains. Results from these experiments support the ligand preferences identified in the peptide library screen and evince the ability of SH3 domains to discern subtle differences in the primary structure of potential ligands. Finally, we have found that most known SH3-binding proteins contain proline-rich regions conforming to the ligand preferences of their respective SH3 targets.

Original languageEnglish (US)
Pages (from-to)1540-1544
Number of pages5
JournalProceedings of the National Academy of Sciences of the United States of America
Volume93
Issue number4
DOIs
StatePublished - Feb 20 1996
Externally publishedYes

Fingerprint

Cortactin
src Homology Domains
Ligands
Peptide Library
Proteins
Bacteriophages
Peptides
Proline
Protein Binding
Signal Transduction
Amino Acids

Keywords

  • phage display
  • protein-protein interactions
  • signal transduction

ASJC Scopus subject areas

  • Genetics
  • General

Cite this

Distinct ligand preferences of Src homology 3 domains from Src, Yes, Abl, Cortactin, p53bp2, PLCγ, Crk, and Grb2. / Sparks, Andrew B.; Rider, James E.; Hoffman, Noah G.; Fowlkes, Dana M.; Quilliam, Lawrence; Kay, Brian K.

In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 93, No. 4, 20.02.1996, p. 1540-1544.

Research output: Contribution to journalArticle

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abstract = "Src homology 3 (SH3) domains are conserved protein modules 50-70 amino acids long found in a variety of proteins with important roles in signal transduction. These domains have been shown to mediate protein-protein interactions by binding short proline-rich regions in ligand proteins. However, the ligand preferences of most SH3 domains and the role of these preferences in regulating SH3-mediated protein-protein interactions remain poorly defined. We have used a phage-displayed library of peptides of the form X6PXXPX6 to identify ligands for eight different SH3 domains. Using this approach, we have determined that each SH3 domain prefers peptide ligands with distinct sequence characteristics. Specifically, we have found that the Src SH3 domain selects peptides sharing the consensus motif LXXRPLPXΨP, whereas Yes SH3 selects ΨXXRPLPXLP, Abl SH3 selects PPXΘXPPPΨP, Cortactin SH3 selects +PPΨPXKPXWL, p53bp2 SH3 selects RPXΨPΨR+SXP, PLCγ SH3 selects PPVPPRPXXTL, Crk N-terminal SH3 selects ΨPΨLPΨK, and Grb2 N-terminal SH3 selects +ΘDXPLPXLP (where Ψ, Θ, and + represent aliphatic, aromatic, and basic residues, respectively). Furthermore, we have compared the binding of phage expressing peptides related to each consensus motif to a panel of 12 SH3 domains. Results from these experiments support the ligand preferences identified in the peptide library screen and evince the ability of SH3 domains to discern subtle differences in the primary structure of potential ligands. Finally, we have found that most known SH3-binding proteins contain proline-rich regions conforming to the ligand preferences of their respective SH3 targets.",
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