Genome-wide association study of bone mineral density in premenopausal European-American Women and replication in African-American women

Daniel L. Koller, Shoji Ichikawa, Dongbing Lai, Leah R. Padgett, Kimberly F. Doheny, Elizabeth Pugh, Justin Paschall, Siu Hui, Howard Edenberg, Xiaoling Xuei, Munro Peacock, Michael Econs, Tatiana Foroud

Research output: Contribution to journalArticle

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Abstract

Context: Several genome-wide association studies (GWAS) have been performed to identify genes contributing to bone mineral density (BMD), typically in samples of elderly women and men. Objective: The objective of the study was to identify genes contributing to BMD in premenopausal women. Design: GWAS using the Illumina 610Quad array in premenopausal European-American (EA) women and replication of the top 50 single-nucleotide polymorphisms (SNPs) for two BMD measures in African-American (AA) women. Subjects: Subjects included 1524 premenopausal EA women aged 20-45 yr from 762 sibships and 669 AA premenopausal women aged 20-44 yr from 383 sibships. Interventions: There were no interventions. Main Outcome Measures: BMD was measured at the lumbar spine and femoral neck by dualenergy x-ray absorptiometry. Age- and weight-adjusted BMD values were tested for association with each SNP, with P values determined by permutation. Results: SNPs in CATSPERB on chromosome 14 provided evidence of association with femoral neck BMD(rs1298989, P=2.7x10-5; rs1285635, P=3.0x10-5) in the EA women, and some supporting evidence was also observed with these SNPs in the AA women (rs1285635, P = 0.003). Genes identified in other BMD GWAS studies, including IBSP and ADAMTS18, were also among the most significant findings in our GWAS. Conclusions: Evidence of association to several novel loci was detected in a GWAS of premenopausal EA women, and SNPs in one of these loci also provided supporting evidence in a sample of AA women.

Original languageEnglish
Pages (from-to)1802-1809
Number of pages8
JournalJournal of Clinical Endocrinology and Metabolism
Volume95
Issue number4
DOIs
StatePublished - Apr 2010

Fingerprint

Genome-Wide Association Study
African Americans
Bone Density
Minerals
Bone
Genes
Polymorphism
Nucleotides
Single Nucleotide Polymorphism
Femur Neck
Chromosomes, Human, Pair 14
Chromosomes
Spine
X rays
X-Rays
Outcome Assessment (Health Care)
Weights and Measures

ASJC Scopus subject areas

  • Biochemistry
  • Clinical Biochemistry
  • Endocrinology
  • Biochemistry, medical
  • Endocrinology, Diabetes and Metabolism
  • Medicine(all)

Cite this

Genome-wide association study of bone mineral density in premenopausal European-American Women and replication in African-American women. / Koller, Daniel L.; Ichikawa, Shoji; Lai, Dongbing; Padgett, Leah R.; Doheny, Kimberly F.; Pugh, Elizabeth; Paschall, Justin; Hui, Siu; Edenberg, Howard; Xuei, Xiaoling; Peacock, Munro; Econs, Michael; Foroud, Tatiana.

In: Journal of Clinical Endocrinology and Metabolism, Vol. 95, No. 4, 04.2010, p. 1802-1809.

Research output: Contribution to journalArticle

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abstract = "Context: Several genome-wide association studies (GWAS) have been performed to identify genes contributing to bone mineral density (BMD), typically in samples of elderly women and men. Objective: The objective of the study was to identify genes contributing to BMD in premenopausal women. Design: GWAS using the Illumina 610Quad array in premenopausal European-American (EA) women and replication of the top 50 single-nucleotide polymorphisms (SNPs) for two BMD measures in African-American (AA) women. Subjects: Subjects included 1524 premenopausal EA women aged 20-45 yr from 762 sibships and 669 AA premenopausal women aged 20-44 yr from 383 sibships. Interventions: There were no interventions. Main Outcome Measures: BMD was measured at the lumbar spine and femoral neck by dualenergy x-ray absorptiometry. Age- and weight-adjusted BMD values were tested for association with each SNP, with P values determined by permutation. Results: SNPs in CATSPERB on chromosome 14 provided evidence of association with femoral neck BMD(rs1298989, P=2.7x10-5; rs1285635, P=3.0x10-5) in the EA women, and some supporting evidence was also observed with these SNPs in the AA women (rs1285635, P = 0.003). Genes identified in other BMD GWAS studies, including IBSP and ADAMTS18, were also among the most significant findings in our GWAS. Conclusions: Evidence of association to several novel loci was detected in a GWAS of premenopausal EA women, and SNPs in one of these loci also provided supporting evidence in a sample of AA women.",
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AU - Ichikawa, Shoji

AU - Lai, Dongbing

AU - Padgett, Leah R.

AU - Doheny, Kimberly F.

AU - Pugh, Elizabeth

AU - Paschall, Justin

AU - Hui, Siu

AU - Edenberg, Howard

AU - Xuei, Xiaoling

AU - Peacock, Munro

AU - Econs, Michael

AU - Foroud, Tatiana

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N2 - Context: Several genome-wide association studies (GWAS) have been performed to identify genes contributing to bone mineral density (BMD), typically in samples of elderly women and men. Objective: The objective of the study was to identify genes contributing to BMD in premenopausal women. Design: GWAS using the Illumina 610Quad array in premenopausal European-American (EA) women and replication of the top 50 single-nucleotide polymorphisms (SNPs) for two BMD measures in African-American (AA) women. Subjects: Subjects included 1524 premenopausal EA women aged 20-45 yr from 762 sibships and 669 AA premenopausal women aged 20-44 yr from 383 sibships. Interventions: There were no interventions. Main Outcome Measures: BMD was measured at the lumbar spine and femoral neck by dualenergy x-ray absorptiometry. Age- and weight-adjusted BMD values were tested for association with each SNP, with P values determined by permutation. Results: SNPs in CATSPERB on chromosome 14 provided evidence of association with femoral neck BMD(rs1298989, P=2.7x10-5; rs1285635, P=3.0x10-5) in the EA women, and some supporting evidence was also observed with these SNPs in the AA women (rs1285635, P = 0.003). Genes identified in other BMD GWAS studies, including IBSP and ADAMTS18, were also among the most significant findings in our GWAS. Conclusions: Evidence of association to several novel loci was detected in a GWAS of premenopausal EA women, and SNPs in one of these loci also provided supporting evidence in a sample of AA women.

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