Human glutathione-dependent formaldehyde dehydrogenase. Structures of apo, binary, and inhibitory ternary complexes

Paresh C. Sanghani, Howard Robinson, William F. Bosron, Thomas Hurley

Research output: Contribution to journalArticle

56 Citations (Scopus)

Abstract

The human glutathione-dependent formaldehyde dehydrogenase is unique among the structurally studied members of the alcohol dehydrogenase family in that it follows a random bi bi kinetic mechanism. The structures of an apo form of the enzyme, a binary complex with substrate 12-hydroxydodecanoic acid, and a ternary complex with NAD+ and the inhibitor dodecanoic acid were determined at 2.0, 2.3, and 2.3 Å resolution by x-ray crystallography using the anomalous diffraction signal of zinc. The structures of the enzyme and its binary complex with the primary alcohol substrate, 12-hydroxydodecanoic acid, and the previously reported binary complex with the coenzyme show that the binding of the first substrate (alcohol or coenzyme) causes only minor changes to the overall structure of the enzyme. This is consistent with the random mechanism of the enzyme where either of the substrates binds to the free enzyme. The catalytic-domain position in these structures is intermediate to the "closed" and "open" conformations observed in class I alcohol dehydrogenases. More importantly, two different tetrahedral coordination environments of the active site zinc are observed in these structures. In the apoenzyme, the active site zinc is coordinated to Cys44, His66 and Cys173, and a water molecule. In the inhibitor complex, the coordination environment involves Glu67 instead of the solvent water molecule. The coordination environment involving Glu67 as the fourth ligand likely represents an intermediate step during ligand exchange at the active site zinc. These observations provide new insight into metal-assisted catalysis and substrate binding in glutathione-dependent formaldehyde dehydrogenase.

Original languageEnglish
Pages (from-to)10778-10786
Number of pages9
JournalBiochemistry
Volume41
Issue number35
DOIs
StatePublished - Sep 3 2002

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glutathione-independent formaldehyde dehydrogenase
Glutathione
Zinc
Catalytic Domain
Substrates
Enzymes
lauric acid
Alcohol Dehydrogenase
Coenzymes
Alcohols
Ligands
Apoenzymes
Crystallography
Molecules
Water
Coordination Complexes
Catalysis
NAD
Conformations
Diffraction

ASJC Scopus subject areas

  • Biochemistry

Cite this

Human glutathione-dependent formaldehyde dehydrogenase. Structures of apo, binary, and inhibitory ternary complexes. / Sanghani, Paresh C.; Robinson, Howard; Bosron, William F.; Hurley, Thomas.

In: Biochemistry, Vol. 41, No. 35, 03.09.2002, p. 10778-10786.

Research output: Contribution to journalArticle

Sanghani, Paresh C. ; Robinson, Howard ; Bosron, William F. ; Hurley, Thomas. / Human glutathione-dependent formaldehyde dehydrogenase. Structures of apo, binary, and inhibitory ternary complexes. In: Biochemistry. 2002 ; Vol. 41, No. 35. pp. 10778-10786.
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