Modulating DNA Repair Pathways to Improve Precision Genome Engineering

Katherine S. Pawelczak, Navnath S. Gavande, Pamela S. VanderVere-Carozza, John Turchi

Research output: Contribution to journalReview article

19 Citations (Scopus)

Abstract

Programmable nucleases like the popular CRISPR/Cas9 system allow for precision genome engineering by inducing a site-specific DNA double strand break (DSB) within a genome. The DSB is repaired by endogenous DNA repair pathways, either nonhomologous end joining (NHEJ) or homology directed repair (HDR). The predominant and error-prone NHEJ pathway often results in small nucleotide insertions or deletions that can be used to construct knockout alleles. Alternatively, HDR activity can result in precise modification incorporating exogenous DNA fragments into the cut site. However, genetic recombination in mammalian systems through the HDR pathway is an inefficient process and requires cumbersome laboratory methods to identify the desired accurate insertion events. This is further compromised by the activity of the competing DNA repair pathway, NHEJ, which repairs the majority of nuclease induced DNA DSBs and also is responsible for mutagenic insertion and deletion events at off-target locations throughout the genome. Various methodologies have been developed to increase the efficiency of designer nuclease-based HDR mediated gene editing. Here, we review these advances toward modulating the activities of the two critical DNA repair pathways, HDR and NHEJ, to enhance precision genome engineering.

Original languageEnglish (US)
Pages (from-to)389-396
Number of pages8
JournalACS Chemical Biology
Volume13
Issue number2
DOIs
StatePublished - Feb 16 2018

Fingerprint

DNA Repair
Repair
Genes
Genome
DNA
Joining
Clustered Regularly Interspaced Short Palindromic Repeats
Double-Stranded DNA Breaks
Deoxyribonucleases
Genetic Recombination
Nucleotides
Alleles

ASJC Scopus subject areas

  • Biochemistry
  • Molecular Medicine

Cite this

Modulating DNA Repair Pathways to Improve Precision Genome Engineering. / Pawelczak, Katherine S.; Gavande, Navnath S.; VanderVere-Carozza, Pamela S.; Turchi, John.

In: ACS Chemical Biology, Vol. 13, No. 2, 16.02.2018, p. 389-396.

Research output: Contribution to journalReview article

Pawelczak, Katherine S. ; Gavande, Navnath S. ; VanderVere-Carozza, Pamela S. ; Turchi, John. / Modulating DNA Repair Pathways to Improve Precision Genome Engineering. In: ACS Chemical Biology. 2018 ; Vol. 13, No. 2. pp. 389-396.
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