Obesity-related genetic variants, human pigmentation, and risk of melanoma

Xin Li, Liming Liang, Mingfeng Zhang, Fengju Song, Hongmei Nan, Li E. Wang, Qingyi Wei, Jeffrey E. Lee, Christopher I. Amos, Abrar A. Qureshi, Jiali Han

Research output: Contribution to journalArticle

13 Citations (Scopus)

Abstract

Previous biological studies showed evidence of a genetic link between obesity and pigmentation in both animal models and humans. Our study investigated the individual and joint associations between obesity-related single nucleotide polymorphisms (SNPs) and both human pigmentation and risk of melanoma. Eight obesity-related SNPs in the FTO, MAP2K5, NEGR1, FLJ35779, ETV5, CADM2, and NUDT3 genes were nominally significantly associated with hair color among 5,876 individuals of European ancestry. The genetic score combining 35 independent obesity-risk loci was significantly associated with darker hair color (beta-coefficient per ten alleles = 0.12, P value = 4 × 10 -5). However, single SNPs or genetic scores showed non-significant association with tanning ability. We further examined the SNPs at the FTO locus for their associations with pigmentation and risk of melanoma. Among the 783 SNPs in the FTO gene with imputation R 2 quality metric >0.8 using the 1,000 genome data set, ten and three independent SNPs were significantly associated with hair color and tanning ability respectively. Moreover, five independent FTO SNPs showed nominally significant association with risk of melanoma in 1,804 cases and 1,026 controls. But none of them was associated with obesity or in linkage disequilibrium with obesity-related variants. FTO locus may confer variation in human pigmentation and risk of melanoma, which may be independent of its effect on obesity.

Original languageEnglish (US)
Pages (from-to)793-801
Number of pages9
JournalHuman Genetics
Volume132
Issue number7
DOIs
StatePublished - Jul 1 2013
Externally publishedYes

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Medical Genetics
Pigmentation
Single Nucleotide Polymorphism
Melanoma
Obesity
Hair Color
Tanning
Linkage Disequilibrium
Genes
Animal Models
Alleles
Genome

ASJC Scopus subject areas

  • Genetics
  • Genetics(clinical)

Cite this

Obesity-related genetic variants, human pigmentation, and risk of melanoma. / Li, Xin; Liang, Liming; Zhang, Mingfeng; Song, Fengju; Nan, Hongmei; Wang, Li E.; Wei, Qingyi; Lee, Jeffrey E.; Amos, Christopher I.; Qureshi, Abrar A.; Han, Jiali.

In: Human Genetics, Vol. 132, No. 7, 01.07.2013, p. 793-801.

Research output: Contribution to journalArticle

Li, X, Liang, L, Zhang, M, Song, F, Nan, H, Wang, LE, Wei, Q, Lee, JE, Amos, CI, Qureshi, AA & Han, J 2013, 'Obesity-related genetic variants, human pigmentation, and risk of melanoma', Human Genetics, vol. 132, no. 7, pp. 793-801. https://doi.org/10.1007/s00439-013-1293-4
Li, Xin ; Liang, Liming ; Zhang, Mingfeng ; Song, Fengju ; Nan, Hongmei ; Wang, Li E. ; Wei, Qingyi ; Lee, Jeffrey E. ; Amos, Christopher I. ; Qureshi, Abrar A. ; Han, Jiali. / Obesity-related genetic variants, human pigmentation, and risk of melanoma. In: Human Genetics. 2013 ; Vol. 132, No. 7. pp. 793-801.
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