Predicting risk for Alcohol Use Disorder using longitudinal data with multimodal biomarkers and family history: a machine learning study

Sivan Kinreich, Jacquelyn L. Meyers, Adi Maron-Katz, Chella Kamarajan, Ashwini K. Pandey, David B. Chorlian, Jian Zhang, Gayathri Pandey, Stacey Subbie-Saenz de Viteri, Dan Pitti, Andrey P. Anokhin, Lance Bauer, Victor Hesselbrock, Marc A. Schuckit, Howard J. Edenberg, Bernice Porjesz

Research output: Contribution to journalArticle

3 Scopus citations

Abstract

Predictive models have succeeded in distinguishing between individuals with Alcohol use Disorder (AUD) and controls. However, predictive models identifying who is prone to develop AUD and the biomarkers indicating a predisposition to AUD are still unclear. Our sample (n = 656) included offspring and non-offspring of European American (EA) and African American (AA) ancestry from the Collaborative Study of the Genetics of Alcoholism (COGA) who were recruited as early as age 12 and were unaffected at first assessment and reassessed years later as AUD (DSM-5) (n = 328) or unaffected (n = 328). Machine learning analysis was performed for 220 EEG measures, 149 alcohol-related single nucleotide polymorphisms (SNPs) from a recent large Genome-wide Association Study (GWAS) of alcohol use/misuse and two family history (mother DSM-5 AUD and father DSM-5 AUD) features using supervised, Linear Support Vector Machine (SVM) classifier to test which features assessed before developing AUD predict those who go on to develop AUD. Age, gender, and ancestry stratified analyses were performed. Results indicate significant and higher accuracy rates for the AA compared with the EA prediction models and a higher model accuracy trend among females compared with males for both ancestries. Combined EEG and SNP features model outperformed models based on only EEG features or only SNP features for both EA and AA samples. This multidimensional superiority was confirmed in a follow-up analysis in the AA age groups (12–15, 16–19, 20–30) and EA age group (16–19). In both ancestry samples, the youngest age group achieved higher accuracy score than the two other older age groups. Maternal AUD increased the model’s accuracy in both ancestries’ samples. Several discriminative EEG measures and SNPs features were identified, including lower posterior gamma, higher slow wave connectivity (delta, theta, alpha), higher frontal gamma ratio, higher beta correlation in the parietal area, and 5 SNPs: rs4780836, rs2605140, rs11690265, rs692854, and rs13380649. Results highlight the significance of sampling uniformity followed by stratified (e.g., ancestry, gender, developmental period) analysis, and wider selection of features, to generate better prediction scores allowing a more accurate estimation of AUD development.

Original languageEnglish (US)
JournalMolecular Psychiatry
DOIs
StateAccepted/In press - Jan 1 2019

ASJC Scopus subject areas

  • Molecular Biology
  • Psychiatry and Mental health
  • Cellular and Molecular Neuroscience

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    Kinreich, S., Meyers, J. L., Maron-Katz, A., Kamarajan, C., Pandey, A. K., Chorlian, D. B., Zhang, J., Pandey, G., Subbie-Saenz de Viteri, S., Pitti, D., Anokhin, A. P., Bauer, L., Hesselbrock, V., Schuckit, M. A., Edenberg, H. J., & Porjesz, B. (Accepted/In press). Predicting risk for Alcohol Use Disorder using longitudinal data with multimodal biomarkers and family history: a machine learning study. Molecular Psychiatry. https://doi.org/10.1038/s41380-019-0534-x