Segmentation, reconstruction, and analysis of blood thrombus formation in 3D 2-photon microscopy images

Jian Mu, Xiaomin Liu, Malgorzata Kamocka, Zhiliang Xu, Mark S. Alber, Elliot Rosen, Danny Z. Chen

Research output: Contribution to journalArticle

10 Citations (Scopus)

Abstract

We study the problem of segmenting, reconstructing, and analyzing the structure growth of thrombi (clots) in blood vessels in vivo based on 2-photon microscopic image data. First, we develop an algorithm for segmenting clots in 3D microscopic images based on density-based clustering and methods for dealing with imaging artifacts. Next, we apply the union-of-balls (or alpha-shape) algorithm to reconstruct the boundary of clots in 3D. Finally, we perform experimental studies and analysis on the reconstructed clots and obtain quantitative data of thrombus growth and structures. We conduct experiments on laser-induced injuries in vessels of two types of mice (the wild type and the type with low levels of coagulation factor VII) and analyze and compare the developing clot structures based on their reconstructed clots from image data. The results we obtain are of biomedical significance. Our quantitative analysis of the clot composition leads to better understanding of the thrombus development, and is valuable to the modeling and verification of computational simulation of thrombogenesis.

Original languageEnglish
Article number147216
JournalEurasip Journal on Advances in Signal Processing
Volume2010
DOIs
StatePublished - 2010

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Microscopic examination
Blood
Photons
Blood vessels
Coagulation
Chemical analysis
Imaging techniques
Lasers
Experiments

ASJC Scopus subject areas

  • Hardware and Architecture
  • Signal Processing
  • Electrical and Electronic Engineering

Cite this

Segmentation, reconstruction, and analysis of blood thrombus formation in 3D 2-photon microscopy images. / Mu, Jian; Liu, Xiaomin; Kamocka, Malgorzata; Xu, Zhiliang; Alber, Mark S.; Rosen, Elliot; Chen, Danny Z.

In: Eurasip Journal on Advances in Signal Processing, Vol. 2010, 147216, 2010.

Research output: Contribution to journalArticle

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AU - Liu, Xiaomin

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AU - Alber, Mark S.

AU - Rosen, Elliot

AU - Chen, Danny Z.

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