Site-specific fab fragment biotinylation at the conserved nucleotide binding site for enhanced ebola detection

Nur Mustafaoglu, Nathan Alves, Basar Bilgicer

Research output: Contribution to journalArticle

6 Citations (Scopus)

Abstract

The nucleotide binding site (NBS) is a highly conserved region between the variable light and heavy chains at the Fab domains of all antibodies, and a small molecule that we identified, indole-3-butyric acid (IBA), binds specifically to this site. Fab fragment, with its small size and simple production methods compared to intact antibody, is good candidate for use in miniaturized diagnostic devices and targeted therapeutic applications. However, commonly used modification techniques are not well suited for Fab fragments as they are often more delicate than intact antibodies. Fab fragments are of particular interest for sensor surface functionalization but immobilization results in damage to the antigen binding site and greatly reduced activity due to their truncated size that allows only a small area that can bind to surfaces without impeding antigen binding. In this study, we describe an NBS-UV photocrosslinking functionalization method (UV-NBSBiotin) in which a Fab fragment is site-specifically biotinylated with an IBA-EG11-Biotin linker via UV energy exposure (1J/cm2) without affecting its antigen binding activity. This study demonstrates successful immobilization of biotinylated Ebola detecting Fab fragment (KZ52 Fab fragment) via the UV-NBSBiotin method yielding 1031-fold and 2-fold better antigen detection sensitivity compared to commonly used immobilization methods: direct physical adsorption and NHS-Biotin functionalization, respectively. Utilization of the UV-NBSBiotin method for site-specific conjugation to Fab fragment represents a proof of concept use of Fab fragment for various diagnostic and therapeutic applications with numerous fluorescent probes, affinity molecules and peptides.

Original languageEnglish (US)
Pages (from-to)1327-1334
Number of pages8
JournalBiotechnology and Bioengineering
Volume112
Issue number7
DOIs
StatePublished - Jul 1 2015
Externally publishedYes

Fingerprint

Biotinylation
Immunoglobulin Fab Fragments
Binding sites
Antigens
Nucleotides
Binding Sites
Antibodies
Butyric acid
Immobilization
Molecules
Peptides
Adsorption
Sensors
Biotin
Fluorescent Dyes
Light
Equipment and Supplies

Keywords

  • Biotinylation
  • Ebola
  • Fab
  • KZ52
  • Nucleotide binding site (NBS)
  • UV-NBS method

ASJC Scopus subject areas

  • Biotechnology
  • Bioengineering
  • Applied Microbiology and Biotechnology

Cite this

Site-specific fab fragment biotinylation at the conserved nucleotide binding site for enhanced ebola detection. / Mustafaoglu, Nur; Alves, Nathan; Bilgicer, Basar.

In: Biotechnology and Bioengineering, Vol. 112, No. 7, 01.07.2015, p. 1327-1334.

Research output: Contribution to journalArticle

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