The Transcription Factor Encyclopedia

Dimas Yusuf, Stefanie L. Butland, Magdalena I. Swanson, Eugene Bolotin, Amy Ticoll, Warren A. Cheung, Xiao Y C Zhang, Christopher T D Dickman, Debra L. Fulton, Jonathan S. Lim, Jake M. Schnabl, Oscar H P Ramos, Mireille Vasseur-Cognet, Charles N. de Leeuw, Elizabeth M. Simpson, Gerhart U. Ryffel, Eric W F Lam, Ralf Kist, Miranda S C Wilson, Raquel Marco-Ferreres & 94 others Jan J. Brosens, Leonardo L. Beccari, Paola Bovolenta, Berenice A. Benayoun, Lara J. Monteiro, Helma D C Schwenen, Lars Grontved, Elizabeth Wederell, Susanne Mandrup, Reiner A. Veitia, Harini Chakravarthy, Pamela A. Hoodless, Michela Mancarelli, Bruce E. Torbett, Alison H. Banham, Sekhar P. Reddy, Rebecca L. Cullum, Michaela Liedtke, Mario P. Tschan, Michelle Vaz, Angie Rizzino, Mariastella Zannini, Seth Frietze, Peggy J. Farnham, Astrid Eijkelenboom, Philip J. Brown, David Laperriere, Dominique Leprince, Tiziana de Cristofaro, Kelly L. Prince, Marrit Putker, Luis del Peso, Gieri Camenisch, Roland H. Wenger, Michal Mikula, Marieke Rozendaal, Sylvie Mader, Jerzy Ostrowski, Simon Rhodes, Capucine Van Rechem, Gaylor Boulay, Sam W Z Olechnowicz, Mary B. Breslin, Michael S. Lan, Kyster K. Nanan, Michael Wegner, Juan Hou, Rachel D. Mullen, Stephanie C. Colvin, Peter J. Noy, Carol F. Webb, Matthew E. Witek, Scott Ferrell, Juliet M. Daniel, Jason Park, Scott A. Waldman, Daniel J. Peet, Michael Taggart, Padma Sheela Jayaraman, Julien J. Karrich, Bianca Blom, Farhad Vesuna, Henriette O'Geen, Yunfu Sun, Richard M. Gronostajski, Mark W. Woodcroft, Margaret R. Hough, Edwin Chen, Nicholas Europe-Finner, Magdalena Karolczak-Bayatti, Jarrod Bailey, Oliver Hankinson, Venu Raman, David P. LeBrun, Shyam Biswal, Christopher J. Harvey, Jason P. DeBruyne, John B. Hogenesch, Robert F. Hevner, Christophe Heligon, Xin M. Luo, Marissa C. Blank, Kathleen J. Millen, David S. Sharlin, Douglas Forrest, Karin Dahlman-Wright, Chunyan Zhao, Yuriko Mishima, Satrajit Sinha, Rumela Chakrabarti, Elodie Portales-Casamar, Frances M. Sladek, Philip H. Bradley, Wyeth W. Wasserman

Research output: Contribution to journalArticle

58 Citations (Scopus)

Abstract

Here we present the Transcription Factor Encyclopedia (TFe), a new web-based compendium of mini review articles on transcription factors (TFs) that is founded on the principles of open access and collaboration. Our consortium of over 100 researchers has collectively contributed over 130 mini review articles on pertinent human, mouse and rat TFs. Notable features of the TFe website include a high-quality PDF generator and web API for programmatic data retrieval. TFe aims to rapidly educate scientists about the TFs they encounter through the delivery of succinct summaries written and vetted by experts in the field. TFe is available at http://www.cisreg.ca/tfe.

Original languageEnglish
JournalGenome Biology
DOIs
StateAccepted/In press - Mar 29 2012
Externally publishedYes

Fingerprint

Encyclopedias
Transcription Factors
transcription factors
Information Storage and Retrieval
researchers
Research Personnel
rats
mice

ASJC Scopus subject areas

  • Genetics
  • Cell Biology
  • Ecology, Evolution, Behavior and Systematics

Cite this

Yusuf, D., Butland, S. L., Swanson, M. I., Bolotin, E., Ticoll, A., Cheung, W. A., ... Wasserman, W. W. (Accepted/In press). The Transcription Factor Encyclopedia. Genome Biology. https://doi.org/10.1186/gb-2012-13-3-r24

The Transcription Factor Encyclopedia. / Yusuf, Dimas; Butland, Stefanie L.; Swanson, Magdalena I.; Bolotin, Eugene; Ticoll, Amy; Cheung, Warren A.; Zhang, Xiao Y C; Dickman, Christopher T D; Fulton, Debra L.; Lim, Jonathan S.; Schnabl, Jake M.; Ramos, Oscar H P; Vasseur-Cognet, Mireille; de Leeuw, Charles N.; Simpson, Elizabeth M.; Ryffel, Gerhart U.; Lam, Eric W F; Kist, Ralf; Wilson, Miranda S C; Marco-Ferreres, Raquel; Brosens, Jan J.; Beccari, Leonardo L.; Bovolenta, Paola; Benayoun, Berenice A.; Monteiro, Lara J.; Schwenen, Helma D C; Grontved, Lars; Wederell, Elizabeth; Mandrup, Susanne; Veitia, Reiner A.; Chakravarthy, Harini; Hoodless, Pamela A.; Mancarelli, Michela; Torbett, Bruce E.; Banham, Alison H.; Reddy, Sekhar P.; Cullum, Rebecca L.; Liedtke, Michaela; Tschan, Mario P.; Vaz, Michelle; Rizzino, Angie; Zannini, Mariastella; Frietze, Seth; Farnham, Peggy J.; Eijkelenboom, Astrid; Brown, Philip J.; Laperriere, David; Leprince, Dominique; de Cristofaro, Tiziana; Prince, Kelly L.; Putker, Marrit; del Peso, Luis; Camenisch, Gieri; Wenger, Roland H.; Mikula, Michal; Rozendaal, Marieke; Mader, Sylvie; Ostrowski, Jerzy; Rhodes, Simon; Van Rechem, Capucine; Boulay, Gaylor; Olechnowicz, Sam W Z; Breslin, Mary B.; Lan, Michael S.; Nanan, Kyster K.; Wegner, Michael; Hou, Juan; Mullen, Rachel D.; Colvin, Stephanie C.; Noy, Peter J.; Webb, Carol F.; Witek, Matthew E.; Ferrell, Scott; Daniel, Juliet M.; Park, Jason; Waldman, Scott A.; Peet, Daniel J.; Taggart, Michael; Jayaraman, Padma Sheela; Karrich, Julien J.; Blom, Bianca; Vesuna, Farhad; O'Geen, Henriette; Sun, Yunfu; Gronostajski, Richard M.; Woodcroft, Mark W.; Hough, Margaret R.; Chen, Edwin; Europe-Finner, Nicholas; Karolczak-Bayatti, Magdalena; Bailey, Jarrod; Hankinson, Oliver; Raman, Venu; LeBrun, David P.; Biswal, Shyam; Harvey, Christopher J.; DeBruyne, Jason P.; Hogenesch, John B.; Hevner, Robert F.; Heligon, Christophe; Luo, Xin M.; Blank, Marissa C.; Millen, Kathleen J.; Sharlin, David S.; Forrest, Douglas; Dahlman-Wright, Karin; Zhao, Chunyan; Mishima, Yuriko; Sinha, Satrajit; Chakrabarti, Rumela; Portales-Casamar, Elodie; Sladek, Frances M.; Bradley, Philip H.; Wasserman, Wyeth W.

In: Genome Biology, 29.03.2012.

Research output: Contribution to journalArticle

Yusuf, D, Butland, SL, Swanson, MI, Bolotin, E, Ticoll, A, Cheung, WA, Zhang, XYC, Dickman, CTD, Fulton, DL, Lim, JS, Schnabl, JM, Ramos, OHP, Vasseur-Cognet, M, de Leeuw, CN, Simpson, EM, Ryffel, GU, Lam, EWF, Kist, R, Wilson, MSC, Marco-Ferreres, R, Brosens, JJ, Beccari, LL, Bovolenta, P, Benayoun, BA, Monteiro, LJ, Schwenen, HDC, Grontved, L, Wederell, E, Mandrup, S, Veitia, RA, Chakravarthy, H, Hoodless, PA, Mancarelli, M, Torbett, BE, Banham, AH, Reddy, SP, Cullum, RL, Liedtke, M, Tschan, MP, Vaz, M, Rizzino, A, Zannini, M, Frietze, S, Farnham, PJ, Eijkelenboom, A, Brown, PJ, Laperriere, D, Leprince, D, de Cristofaro, T, Prince, KL, Putker, M, del Peso, L, Camenisch, G, Wenger, RH, Mikula, M, Rozendaal, M, Mader, S, Ostrowski, J, Rhodes, S, Van Rechem, C, Boulay, G, Olechnowicz, SWZ, Breslin, MB, Lan, MS, Nanan, KK, Wegner, M, Hou, J, Mullen, RD, Colvin, SC, Noy, PJ, Webb, CF, Witek, ME, Ferrell, S, Daniel, JM, Park, J, Waldman, SA, Peet, DJ, Taggart, M, Jayaraman, PS, Karrich, JJ, Blom, B, Vesuna, F, O'Geen, H, Sun, Y, Gronostajski, RM, Woodcroft, MW, Hough, MR, Chen, E, Europe-Finner, N, Karolczak-Bayatti, M, Bailey, J, Hankinson, O, Raman, V, LeBrun, DP, Biswal, S, Harvey, CJ, DeBruyne, JP, Hogenesch, JB, Hevner, RF, Heligon, C, Luo, XM, Blank, MC, Millen, KJ, Sharlin, DS, Forrest, D, Dahlman-Wright, K, Zhao, C, Mishima, Y, Sinha, S, Chakrabarti, R, Portales-Casamar, E, Sladek, FM, Bradley, PH & Wasserman, WW 2012, 'The Transcription Factor Encyclopedia', Genome Biology. https://doi.org/10.1186/gb-2012-13-3-r24
Yusuf D, Butland SL, Swanson MI, Bolotin E, Ticoll A, Cheung WA et al. The Transcription Factor Encyclopedia. Genome Biology. 2012 Mar 29. https://doi.org/10.1186/gb-2012-13-3-r24
Yusuf, Dimas ; Butland, Stefanie L. ; Swanson, Magdalena I. ; Bolotin, Eugene ; Ticoll, Amy ; Cheung, Warren A. ; Zhang, Xiao Y C ; Dickman, Christopher T D ; Fulton, Debra L. ; Lim, Jonathan S. ; Schnabl, Jake M. ; Ramos, Oscar H P ; Vasseur-Cognet, Mireille ; de Leeuw, Charles N. ; Simpson, Elizabeth M. ; Ryffel, Gerhart U. ; Lam, Eric W F ; Kist, Ralf ; Wilson, Miranda S C ; Marco-Ferreres, Raquel ; Brosens, Jan J. ; Beccari, Leonardo L. ; Bovolenta, Paola ; Benayoun, Berenice A. ; Monteiro, Lara J. ; Schwenen, Helma D C ; Grontved, Lars ; Wederell, Elizabeth ; Mandrup, Susanne ; Veitia, Reiner A. ; Chakravarthy, Harini ; Hoodless, Pamela A. ; Mancarelli, Michela ; Torbett, Bruce E. ; Banham, Alison H. ; Reddy, Sekhar P. ; Cullum, Rebecca L. ; Liedtke, Michaela ; Tschan, Mario P. ; Vaz, Michelle ; Rizzino, Angie ; Zannini, Mariastella ; Frietze, Seth ; Farnham, Peggy J. ; Eijkelenboom, Astrid ; Brown, Philip J. ; Laperriere, David ; Leprince, Dominique ; de Cristofaro, Tiziana ; Prince, Kelly L. ; Putker, Marrit ; del Peso, Luis ; Camenisch, Gieri ; Wenger, Roland H. ; Mikula, Michal ; Rozendaal, Marieke ; Mader, Sylvie ; Ostrowski, Jerzy ; Rhodes, Simon ; Van Rechem, Capucine ; Boulay, Gaylor ; Olechnowicz, Sam W Z ; Breslin, Mary B. ; Lan, Michael S. ; Nanan, Kyster K. ; Wegner, Michael ; Hou, Juan ; Mullen, Rachel D. ; Colvin, Stephanie C. ; Noy, Peter J. ; Webb, Carol F. ; Witek, Matthew E. ; Ferrell, Scott ; Daniel, Juliet M. ; Park, Jason ; Waldman, Scott A. ; Peet, Daniel J. ; Taggart, Michael ; Jayaraman, Padma Sheela ; Karrich, Julien J. ; Blom, Bianca ; Vesuna, Farhad ; O'Geen, Henriette ; Sun, Yunfu ; Gronostajski, Richard M. ; Woodcroft, Mark W. ; Hough, Margaret R. ; Chen, Edwin ; Europe-Finner, Nicholas ; Karolczak-Bayatti, Magdalena ; Bailey, Jarrod ; Hankinson, Oliver ; Raman, Venu ; LeBrun, David P. ; Biswal, Shyam ; Harvey, Christopher J. ; DeBruyne, Jason P. ; Hogenesch, John B. ; Hevner, Robert F. ; Heligon, Christophe ; Luo, Xin M. ; Blank, Marissa C. ; Millen, Kathleen J. ; Sharlin, David S. ; Forrest, Douglas ; Dahlman-Wright, Karin ; Zhao, Chunyan ; Mishima, Yuriko ; Sinha, Satrajit ; Chakrabarti, Rumela ; Portales-Casamar, Elodie ; Sladek, Frances M. ; Bradley, Philip H. ; Wasserman, Wyeth W. / The Transcription Factor Encyclopedia. In: Genome Biology. 2012.
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AU - Yusuf, Dimas

AU - Butland, Stefanie L.

AU - Swanson, Magdalena I.

AU - Bolotin, Eugene

AU - Ticoll, Amy

AU - Cheung, Warren A.

AU - Zhang, Xiao Y C

AU - Dickman, Christopher T D

AU - Fulton, Debra L.

AU - Lim, Jonathan S.

AU - Schnabl, Jake M.

AU - Ramos, Oscar H P

AU - Vasseur-Cognet, Mireille

AU - de Leeuw, Charles N.

AU - Simpson, Elizabeth M.

AU - Ryffel, Gerhart U.

AU - Lam, Eric W F

AU - Kist, Ralf

AU - Wilson, Miranda S C

AU - Marco-Ferreres, Raquel

AU - Brosens, Jan J.

AU - Beccari, Leonardo L.

AU - Bovolenta, Paola

AU - Benayoun, Berenice A.

AU - Monteiro, Lara J.

AU - Schwenen, Helma D C

AU - Grontved, Lars

AU - Wederell, Elizabeth

AU - Mandrup, Susanne

AU - Veitia, Reiner A.

AU - Chakravarthy, Harini

AU - Hoodless, Pamela A.

AU - Mancarelli, Michela

AU - Torbett, Bruce E.

AU - Banham, Alison H.

AU - Reddy, Sekhar P.

AU - Cullum, Rebecca L.

AU - Liedtke, Michaela

AU - Tschan, Mario P.

AU - Vaz, Michelle

AU - Rizzino, Angie

AU - Zannini, Mariastella

AU - Frietze, Seth

AU - Farnham, Peggy J.

AU - Eijkelenboom, Astrid

AU - Brown, Philip J.

AU - Laperriere, David

AU - Leprince, Dominique

AU - de Cristofaro, Tiziana

AU - Prince, Kelly L.

AU - Putker, Marrit

AU - del Peso, Luis

AU - Camenisch, Gieri

AU - Wenger, Roland H.

AU - Mikula, Michal

AU - Rozendaal, Marieke

AU - Mader, Sylvie

AU - Ostrowski, Jerzy

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AU - Colvin, Stephanie C.

AU - Noy, Peter J.

AU - Webb, Carol F.

AU - Witek, Matthew E.

AU - Ferrell, Scott

AU - Daniel, Juliet M.

AU - Park, Jason

AU - Waldman, Scott A.

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AU - Taggart, Michael

AU - Jayaraman, Padma Sheela

AU - Karrich, Julien J.

AU - Blom, Bianca

AU - Vesuna, Farhad

AU - O'Geen, Henriette

AU - Sun, Yunfu

AU - Gronostajski, Richard M.

AU - Woodcroft, Mark W.

AU - Hough, Margaret R.

AU - Chen, Edwin

AU - Europe-Finner, Nicholas

AU - Karolczak-Bayatti, Magdalena

AU - Bailey, Jarrod

AU - Hankinson, Oliver

AU - Raman, Venu

AU - LeBrun, David P.

AU - Biswal, Shyam

AU - Harvey, Christopher J.

AU - DeBruyne, Jason P.

AU - Hogenesch, John B.

AU - Hevner, Robert F.

AU - Heligon, Christophe

AU - Luo, Xin M.

AU - Blank, Marissa C.

AU - Millen, Kathleen J.

AU - Sharlin, David S.

AU - Forrest, Douglas

AU - Dahlman-Wright, Karin

AU - Zhao, Chunyan

AU - Mishima, Yuriko

AU - Sinha, Satrajit

AU - Chakrabarti, Rumela

AU - Portales-Casamar, Elodie

AU - Sladek, Frances M.

AU - Bradley, Philip H.

AU - Wasserman, Wyeth W.

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AB - Here we present the Transcription Factor Encyclopedia (TFe), a new web-based compendium of mini review articles on transcription factors (TFs) that is founded on the principles of open access and collaboration. Our consortium of over 100 researchers has collectively contributed over 130 mini review articles on pertinent human, mouse and rat TFs. Notable features of the TFe website include a high-quality PDF generator and web API for programmatic data retrieval. TFe aims to rapidly educate scientists about the TFs they encounter through the delivery of succinct summaries written and vetted by experts in the field. TFe is available at http://www.cisreg.ca/tfe.

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