Three dimensional blind image deconvolution for fluorescence microscopy using generative adversarial networks

Soonam Lee, Shuo Han, Paul Salama, Kenneth W. Dunn, Edward J. Delp

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

Due to image blurring image deconvolution is often used for studying biological structures in fluorescence microscopy. Fluorescence microscopy image volumes inherently suffer from intensity inhomogeneity, blur, and are corrupted by various types of noise which exacerbate image quality at deeper tissue depth. Therefore, quantitative analysis of fluorescence microscopy in deeper tissue still remains a challenge. This paper presents a three dimensional blind image deconvolution method for fluorescence microscopy using 3way spatially constrained cycle-consistent adversarial networks. The restored volumes of the proposed deconvolution method and other well-known deconvolution methods, denoising methods, and an inhomogeneity correction method are visually and numerically evaluated. Experimental results indicate that the proposed method can restore and improve the quality of blurred and noisy deep depth microscopy image visually and quantitatively.

Original languageEnglish (US)
Title of host publicationISBI 2019 - 2019 IEEE International Symposium on Biomedical Imaging
PublisherIEEE Computer Society
Pages538-542
Number of pages5
ISBN (Electronic)9781538636411
DOIs
StatePublished - Apr 2019
Event16th IEEE International Symposium on Biomedical Imaging, ISBI 2019 - Venice, Italy
Duration: Apr 8 2019Apr 11 2019

Publication series

NameProceedings - International Symposium on Biomedical Imaging
Volume2019-April
ISSN (Print)1945-7928
ISSN (Electronic)1945-8452

Conference

Conference16th IEEE International Symposium on Biomedical Imaging, ISBI 2019
CountryItaly
CityVenice
Period4/8/194/11/19

Fingerprint

Three-Dimensional Imaging
Fluorescence microscopy
Deconvolution
Fluorescence Microscopy
Tissue
Image quality
Microscopic examination
Noise
Microscopy
Chemical analysis

Keywords

  • Fluorescence microscopy
  • Generative adversarial networks
  • Image deconvolution
  • Image restoration
  • Microscopy image quality

ASJC Scopus subject areas

  • Biomedical Engineering
  • Radiology Nuclear Medicine and imaging

Cite this

Lee, S., Han, S., Salama, P., Dunn, K. W., & Delp, E. J. (2019). Three dimensional blind image deconvolution for fluorescence microscopy using generative adversarial networks. In ISBI 2019 - 2019 IEEE International Symposium on Biomedical Imaging (pp. 538-542). [8759250] (Proceedings - International Symposium on Biomedical Imaging; Vol. 2019-April). IEEE Computer Society. https://doi.org/10.1109/ISBI.2019.8759250

Three dimensional blind image deconvolution for fluorescence microscopy using generative adversarial networks. / Lee, Soonam; Han, Shuo; Salama, Paul; Dunn, Kenneth W.; Delp, Edward J.

ISBI 2019 - 2019 IEEE International Symposium on Biomedical Imaging. IEEE Computer Society, 2019. p. 538-542 8759250 (Proceedings - International Symposium on Biomedical Imaging; Vol. 2019-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Lee, S, Han, S, Salama, P, Dunn, KW & Delp, EJ 2019, Three dimensional blind image deconvolution for fluorescence microscopy using generative adversarial networks. in ISBI 2019 - 2019 IEEE International Symposium on Biomedical Imaging., 8759250, Proceedings - International Symposium on Biomedical Imaging, vol. 2019-April, IEEE Computer Society, pp. 538-542, 16th IEEE International Symposium on Biomedical Imaging, ISBI 2019, Venice, Italy, 4/8/19. https://doi.org/10.1109/ISBI.2019.8759250
Lee S, Han S, Salama P, Dunn KW, Delp EJ. Three dimensional blind image deconvolution for fluorescence microscopy using generative adversarial networks. In ISBI 2019 - 2019 IEEE International Symposium on Biomedical Imaging. IEEE Computer Society. 2019. p. 538-542. 8759250. (Proceedings - International Symposium on Biomedical Imaging). https://doi.org/10.1109/ISBI.2019.8759250
Lee, Soonam ; Han, Shuo ; Salama, Paul ; Dunn, Kenneth W. ; Delp, Edward J. / Three dimensional blind image deconvolution for fluorescence microscopy using generative adversarial networks. ISBI 2019 - 2019 IEEE International Symposium on Biomedical Imaging. IEEE Computer Society, 2019. pp. 538-542 (Proceedings - International Symposium on Biomedical Imaging).
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