Ubiquitous and cell-type-specific protein interactions with human papillomavirus type 16 and type 18 enhancers

Harikrishna Nakshatri, Mary M. Pater, Alan Pater

Research output: Contribution to journalArticle

22 Citations (Scopus)

Abstract

We have studied the protein-DNA interactions of human papillomavirus types 16 and 18 constitutive enhancer elements using DNasel footprinting experiments with nuclear extracts from four cervical carcinoma cell lines (C33A, HeLa, SiHa, and CaSki) and one fibroblast cell line (143B). Among nine footprints for the HPV 16 enhancer region, six footprints contain nuclear factor 1 (NF1) binding GCCAA motif. In vitro competition experiments suggest that the same factors are shared by all six of these motifs. Two other sequence motifs have consensus sequences for transcription factor AP1. Another sequence motif, for which uv crosslinking studies reveal interaction with four protein molecules, is a strong positive modulator of HPV 16 enhancer function in vivo and shares 100% homology to a sequence motif, GTTTTAA, in the tissue-specific enhancer of the c-mos oncogene. Footprints on the HPV 18 enhancer show five protected regions with homologies to NF1, AP1, and EFII transcription factor binding motifs. One sequence motif of the HPV 18 enhancer has three repeats of a TTTTA sequence contained within the c-mos sequence motif and interacts with at least four different individual polypeptides, as judged by uv crosslinking experiments.

Original languageEnglish (US)
Pages (from-to)92-103
Number of pages12
JournalVirology
Volume178
Issue number1
DOIs
StatePublished - 1990
Externally publishedYes

Fingerprint

Human papillomavirus 18
Human papillomavirus 16
NFI Transcription Factors
mos Genes
Transcription Factors
Cell Line
Proteins
Consensus Sequence
Fibroblasts
Carcinoma
Peptides
DNA

ASJC Scopus subject areas

  • Virology
  • Infectious Diseases

Cite this

Ubiquitous and cell-type-specific protein interactions with human papillomavirus type 16 and type 18 enhancers. / Nakshatri, Harikrishna; Pater, Mary M.; Pater, Alan.

In: Virology, Vol. 178, No. 1, 1990, p. 92-103.

Research output: Contribution to journalArticle

@article{05ad69a525ff4d2c818e28e72603def5,
title = "Ubiquitous and cell-type-specific protein interactions with human papillomavirus type 16 and type 18 enhancers",
abstract = "We have studied the protein-DNA interactions of human papillomavirus types 16 and 18 constitutive enhancer elements using DNasel footprinting experiments with nuclear extracts from four cervical carcinoma cell lines (C33A, HeLa, SiHa, and CaSki) and one fibroblast cell line (143B). Among nine footprints for the HPV 16 enhancer region, six footprints contain nuclear factor 1 (NF1) binding GCCAA motif. In vitro competition experiments suggest that the same factors are shared by all six of these motifs. Two other sequence motifs have consensus sequences for transcription factor AP1. Another sequence motif, for which uv crosslinking studies reveal interaction with four protein molecules, is a strong positive modulator of HPV 16 enhancer function in vivo and shares 100{\%} homology to a sequence motif, GTTTTAA, in the tissue-specific enhancer of the c-mos oncogene. Footprints on the HPV 18 enhancer show five protected regions with homologies to NF1, AP1, and EFII transcription factor binding motifs. One sequence motif of the HPV 18 enhancer has three repeats of a TTTTA sequence contained within the c-mos sequence motif and interacts with at least four different individual polypeptides, as judged by uv crosslinking experiments.",
author = "Harikrishna Nakshatri and Pater, {Mary M.} and Alan Pater",
year = "1990",
doi = "10.1016/0042-6822(90)90382-2",
language = "English (US)",
volume = "178",
pages = "92--103",
journal = "Virology",
issn = "0042-6822",
publisher = "Academic Press Inc.",
number = "1",

}

TY - JOUR

T1 - Ubiquitous and cell-type-specific protein interactions with human papillomavirus type 16 and type 18 enhancers

AU - Nakshatri, Harikrishna

AU - Pater, Mary M.

AU - Pater, Alan

PY - 1990

Y1 - 1990

N2 - We have studied the protein-DNA interactions of human papillomavirus types 16 and 18 constitutive enhancer elements using DNasel footprinting experiments with nuclear extracts from four cervical carcinoma cell lines (C33A, HeLa, SiHa, and CaSki) and one fibroblast cell line (143B). Among nine footprints for the HPV 16 enhancer region, six footprints contain nuclear factor 1 (NF1) binding GCCAA motif. In vitro competition experiments suggest that the same factors are shared by all six of these motifs. Two other sequence motifs have consensus sequences for transcription factor AP1. Another sequence motif, for which uv crosslinking studies reveal interaction with four protein molecules, is a strong positive modulator of HPV 16 enhancer function in vivo and shares 100% homology to a sequence motif, GTTTTAA, in the tissue-specific enhancer of the c-mos oncogene. Footprints on the HPV 18 enhancer show five protected regions with homologies to NF1, AP1, and EFII transcription factor binding motifs. One sequence motif of the HPV 18 enhancer has three repeats of a TTTTA sequence contained within the c-mos sequence motif and interacts with at least four different individual polypeptides, as judged by uv crosslinking experiments.

AB - We have studied the protein-DNA interactions of human papillomavirus types 16 and 18 constitutive enhancer elements using DNasel footprinting experiments with nuclear extracts from four cervical carcinoma cell lines (C33A, HeLa, SiHa, and CaSki) and one fibroblast cell line (143B). Among nine footprints for the HPV 16 enhancer region, six footprints contain nuclear factor 1 (NF1) binding GCCAA motif. In vitro competition experiments suggest that the same factors are shared by all six of these motifs. Two other sequence motifs have consensus sequences for transcription factor AP1. Another sequence motif, for which uv crosslinking studies reveal interaction with four protein molecules, is a strong positive modulator of HPV 16 enhancer function in vivo and shares 100% homology to a sequence motif, GTTTTAA, in the tissue-specific enhancer of the c-mos oncogene. Footprints on the HPV 18 enhancer show five protected regions with homologies to NF1, AP1, and EFII transcription factor binding motifs. One sequence motif of the HPV 18 enhancer has three repeats of a TTTTA sequence contained within the c-mos sequence motif and interacts with at least four different individual polypeptides, as judged by uv crosslinking experiments.

UR - http://www.scopus.com/inward/record.url?scp=0025148459&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=0025148459&partnerID=8YFLogxK

U2 - 10.1016/0042-6822(90)90382-2

DO - 10.1016/0042-6822(90)90382-2

M3 - Article

VL - 178

SP - 92

EP - 103

JO - Virology

JF - Virology

SN - 0042-6822

IS - 1

ER -