Update on Pneumocystis carinii f. sp. hominis typing based on nucleotide sequence variations in internal transcribed spacer regions of rRNA genes

Chao Hung Lee; Jannik Helweg-Larsen; Xing Tang; Shaoling Jin; Baozheng Li; Marilyn S. Bartlett; Jang Jih Lu; Bettina Lundgren; Jens D. Lundgren; Mats Olsson; Sebastian B. Lucas; Patricia Roux; Antonietta Cargnel; Chiara Atzori; Olga Matos; James W. Smith

doi:10.1128/jcm.36.3.734-741.1998

Update on Pneumocystis carinii f. sp. hominis typing based on nucleotide sequence variations in internal transcribed spacer regions of rRNA genes

Chao Hung Lee, Jannik Helweg-Larsen, Xing Tang, Shaoling Jin, Baozheng Li, Marilyn S. Bartlett, Jang Jih Lu, Bettina Lundgren, Jens D. Lundgren, Mats Olsson, Sebastian B. Lucas, Patricia Roux, Antonietta Cargnel, Chiara Atzori, Olga Matos, James W. Smith

Pathology & Laboratory Medicine

Research output: Contribution to journal › Article

127 Scopus citations

Abstract

Pneumocystis carinii f. sp. hominis isolates from 207 clinical specimens from nine countries were typed based on nucleotide sequence variations in the internal transcribed spacer regions I and II (ITS1 and ITS2, respectively) of rRNA genes. The number of ITS1 nucleotides has been revised from the previously reported 157 bp to 161 bp. Likewise, the number of ITS2 nucleotides has been changed from 177 to 192 bp. The number of ITS1 sequence types has increased from 2 to 15, and that of ITS2 has increased from 3 to 14. The 15 ITS1 sequence types are designated types A through O, and the 14 ITS2 types are named types a through n. A total of 59 types of P. carinii f. sp. hominis were found in this study.

Original language	English (US)
Pages (from-to)	734-741
Number of pages	8
Journal	Journal of clinical microbiology
Volume	36
Issue number	3
DOIs	https://doi.org/10.1128/jcm.36.3.734-741.1998
State	Published - Mar 1998

ASJC Scopus subject areas

Microbiology (medical)

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Lee, C. H., Helweg-Larsen, J., Tang, X., Jin, S., Li, B., Bartlett, M. S., Lu, J. J., Lundgren, B., Lundgren, J. D., Olsson, M., Lucas, S. B., Roux, P., Cargnel, A., Atzori, C., Matos, O., & Smith, J. W. (1998). Update on Pneumocystis carinii f. sp. hominis typing based on nucleotide sequence variations in internal transcribed spacer regions of rRNA genes. Journal of clinical microbiology, 36(3), 734-741. https://doi.org/10.1128/jcm.36.3.734-741.1998

Update on Pneumocystis carinii f. sp. hominis typing based on nucleotide sequence variations in internal transcribed spacer regions of rRNA genes. / Lee, Chao Hung; Helweg-Larsen, Jannik; Tang, Xing; Jin, Shaoling; Li, Baozheng; Bartlett, Marilyn S.; Lu, Jang Jih; Lundgren, Bettina; Lundgren, Jens D.; Olsson, Mats; Lucas, Sebastian B.; Roux, Patricia; Cargnel, Antonietta; Atzori, Chiara; Matos, Olga; Smith, James W.

In: Journal of clinical microbiology, Vol. 36, No. 3, 03.1998, p. 734-741.

Research output: Contribution to journal › Article

Lee, CH, Helweg-Larsen, J, Tang, X, Jin, S, Li, B, Bartlett, MS, Lu, JJ, Lundgren, B, Lundgren, JD, Olsson, M, Lucas, SB, Roux, P, Cargnel, A, Atzori, C, Matos, O & Smith, JW 1998, 'Update on Pneumocystis carinii f. sp. hominis typing based on nucleotide sequence variations in internal transcribed spacer regions of rRNA genes', Journal of clinical microbiology, vol. 36, no. 3, pp. 734-741. https://doi.org/10.1128/jcm.36.3.734-741.1998

Lee, Chao Hung ; Helweg-Larsen, Jannik ; Tang, Xing ; Jin, Shaoling ; Li, Baozheng ; Bartlett, Marilyn S. ; Lu, Jang Jih ; Lundgren, Bettina ; Lundgren, Jens D. ; Olsson, Mats ; Lucas, Sebastian B. ; Roux, Patricia ; Cargnel, Antonietta ; Atzori, Chiara ; Matos, Olga ; Smith, James W. / Update on Pneumocystis carinii f. sp. hominis typing based on nucleotide sequence variations in internal transcribed spacer regions of rRNA genes. In: Journal of clinical microbiology. 1998 ; Vol. 36, No. 3. pp. 734-741.

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abstract = "Pneumocystis carinii f. sp. hominis isolates from 207 clinical specimens from nine countries were typed based on nucleotide sequence variations in the internal transcribed spacer regions I and II (ITS1 and ITS2, respectively) of rRNA genes. The number of ITS1 nucleotides has been revised from the previously reported 157 bp to 161 bp. Likewise, the number of ITS2 nucleotides has been changed from 177 to 192 bp. The number of ITS1 sequence types has increased from 2 to 15, and that of ITS2 has increased from 3 to 14. The 15 ITS1 sequence types are designated types A through O, and the 14 ITS2 types are named types a through n. A total of 59 types of P. carinii f. sp. hominis were found in this study.",

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AU - Olsson, Mats

AU - Lucas, Sebastian B.

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